Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe10g00217 | ATGACAGGAATTTCCATCTTGATGGCAAGTGGGTTCGAAGAATCAACTAAGGCTGCACCTCAGAACCCTTTTACTTCAAGCAATGGCAACAACTCTAACAACGAAGCAGGTGATTTTGAATGCAATATCTGCTTCGAATTAGCTCAAGACCCAATTGTAACTCTCTGTGGCCACCTCTTTTGCTGGCCTTGTCTTTACAAATGGCTGCACTATCACTCTCACTCTCAGGAATGCCCTGTTTGCAAGGCTCTTATTCAGGAAGAGAAGTTGGTTCCTCTTTATGGCAGGGGCAAAACTCAAGACGACCCTCGATCAAAGTCATACCCTAGTTTCAATATTCCAAATCGCCCTTCAGGACAAAGGCCTGATACGGCCCCTCCACCACAATCAAATCACTTTACAAATCACGGGTTTGGATTTATGGGCGGATTCGCACCAATGGCATCCGCCAGGTTTGGGAACTTCACATTGGCAACTGCTTTTGGAGGTCTAATTCCTTCTTTATTTAACGTTCAGTTTCATGGATATCCTGATGCCACTGTGTATGGTACTACTTCTGGTTTTCCTTATGCATTTAATACATATCATGGTGGCCAAGCTCACGGTTTTCCCCAACCTCCAAATCGGGGGCAGCAGGGTGATAATATACTGAAGAATCTCCTCTTGCTGATTGGTGTATTTGTTATTCTTGCTCTTCTATATTGTTAG | 708 | 44.07 | MTGISILMASGFEESTKAAPQNPFTSSNGNNSNNEAGDFECNICFELAQDPIVTLCGHLFCWPCLYKWLHYHSHSQECPVCKALIQEEKLVPLYGRGKTQDDPRSKSYPSFNIPNRPSGQRPDTAPPPQSNHFTNHGFGFMGGFAPMASARFGNFTLATAFGGLIPSLFNVQFHGYPDATVYGTTSGFPYAFNTYHGGQAHGFPQPPNRGQQGDNILKNLLLLIGVFVILALLYC | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8334740 | 8335447 | + | Bpe002547.1 | Bpe10g00217 | 109339 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe10g00217 | 235 | MobiDBLite | consensus disorder prediction | 104 | 131 | - | - | |
Bpe10g00217 | 235 | SUPERFAMILY | RING/U-box | 37 | 94 | - | - | |
Bpe10g00217 | 235 | MobiDBLite | consensus disorder prediction | 95 | 131 | - | - | |
Bpe10g00217 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 41 | 82 | IPR001841 | - | |
Bpe10g00217 | 235 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 9 | 234 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Bpe10g00217 | 235 | ProSitePatterns | Zinc finger RING-type signature. | 56 | 65 | IPR017907 | - | |
Bpe10g00217 | 235 | SMART | ring_2 | 41 | 81 | IPR001841 | - | |
Bpe10g00217 | 235 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 9 | 234 | - | - | |
Bpe10g00217 | 235 | CDD | RING-HC_AtRMA_like | 39 | 83 | - | - | |
Bpe10g00217 | 235 | Pfam | Zinc finger, C3HC4 type (RING finger) | 41 | 81 | IPR018957 | GO:0046872 | |
Bpe10g00217 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 96 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe03g01151 | Bpe-Chr3:30567731 | Bpe10g00217 | Bpe-Chr10:8334740 | 7.52E-27 | dispersed | |
Bpe10g00217 | Bpe-Chr10:8334740 | Bpe02g00406 | Bpe-Chr2:2636777 | 1.27E-95 | dispersed | |
Bpe10g00217 | Bpe-Chr10:8334740 | Bpe15g00363 | Bpe-Chr15:15181409 | 1.08E-128 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe10g00217 | K10666 | - | mnt:21392517 | 392.504 |