Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00217 ATGACAGGAATTTCCATCTTGATGGCAAGTGGGTTCGAAGAATCAACTAAGGCTGCACCTCAGAACCCTTTTACTTCAAGCAATGGCAACAACTCTAACAACGAAGCAGGTGATTTTGAATGCAATATCTGCTTCGAATTAGCTCAAGACCCAATTGTAACTCTCTGTGGCCACCTCTTTTGCTGGCCTTGTCTTTACAAATGGCTGCACTATCACTCTCACTCTCAGGAATGCCCTGTTTGCAAGGCTCTTATTCAGGAAGAGAAGTTGGTTCCTCTTTATGGCAGGGGCAAAACTCAAGACGACCCTCGATCAAAGTCATACCCTAGTTTCAATATTCCAAATCGCCCTTCAGGACAAAGGCCTGATACGGCCCCTCCACCACAATCAAATCACTTTACAAATCACGGGTTTGGATTTATGGGCGGATTCGCACCAATGGCATCCGCCAGGTTTGGGAACTTCACATTGGCAACTGCTTTTGGAGGTCTAATTCCTTCTTTATTTAACGTTCAGTTTCATGGATATCCTGATGCCACTGTGTATGGTACTACTTCTGGTTTTCCTTATGCATTTAATACATATCATGGTGGCCAAGCTCACGGTTTTCCCCAACCTCCAAATCGGGGGCAGCAGGGTGATAATATACTGAAGAATCTCCTCTTGCTGATTGGTGTATTTGTTATTCTTGCTCTTCTATATTGTTAG 708 44.07 MTGISILMASGFEESTKAAPQNPFTSSNGNNSNNEAGDFECNICFELAQDPIVTLCGHLFCWPCLYKWLHYHSHSQECPVCKALIQEEKLVPLYGRGKTQDDPRSKSYPSFNIPNRPSGQRPDTAPPPQSNHFTNHGFGFMGGFAPMASARFGNFTLATAFGGLIPSLFNVQFHGYPDATVYGTTSGFPYAFNTYHGGQAHGFPQPPNRGQQGDNILKNLLLLIGVFVILALLYC 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8334740 8335447 + Bpe002547.1 Bpe10g00217 109339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00217 235 MobiDBLite consensus disorder prediction 104 131 - -
Bpe10g00217 235 SUPERFAMILY RING/U-box 37 94 - -
Bpe10g00217 235 MobiDBLite consensus disorder prediction 95 131 - -
Bpe10g00217 235 ProSiteProfiles Zinc finger RING-type profile. 41 82 IPR001841 -
Bpe10g00217 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bpe10g00217 235 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
Bpe10g00217 235 SMART ring_2 41 81 IPR001841 -
Bpe10g00217 235 PANTHER RING ZINC FINGER PROTEIN-RELATED 9 234 - -
Bpe10g00217 235 CDD RING-HC_AtRMA_like 39 83 - -
Bpe10g00217 235 Pfam Zinc finger, C3HC4 type (RING finger) 41 81 IPR018957 GO:0046872
Bpe10g00217 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 96 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01151 Bpe-Chr3:30567731 Bpe10g00217 Bpe-Chr10:8334740 7.52E-27 dispersed
Bpe10g00217 Bpe-Chr10:8334740 Bpe02g00406 Bpe-Chr2:2636777 1.27E-95 dispersed
Bpe10g00217 Bpe-Chr10:8334740 Bpe15g00363 Bpe-Chr15:15181409 1.08E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00217 K10666 - mnt:21392517 392.504