Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00254 ATGGAAGAACAGCTCCTCCACAGCCAAGTTCCTTTCGGTCATCATTCTCTTTTGCCCTATTTATATATTCCCGTTGATCAAATCCCGTACAATACCCCGCCGACCTTTCCTCATTTTAACTGTCAAGTGGCGAATTGTGTGAAGGGTGATGAACAAGAATCAGATCAAGATCTTGGTGCAATGAAGGAGATGATGTACAGAATTGCATCTATGCAGCCAGTGGACATTGACCCTGCCACCATCCCAAAGCCGAAACGGAAGAATGTTCGATTCAGTGATGACCCTCAGAGTGTAGCTGCCCGTTTACGAAGAGAGAAAATAAGCGAAAAAATGCGTATCCTCCAGCGTCTCGTCCCGGGAGGAACACGATTGGACAAGGCTACCATGCTAGATGAAGCAATTCGATACATCAAGTTCTTAAGACGACAAATCCGCTTGTTACAATCTAATTATCAACCTCAAAGCATTAACTTCAGCTTGGGTTCATCTTCCTCAACTCCAACGGATGGGTCTTTGAGAGCTAATGGAGGTGCAGCCTCCACTGAACCTGGACTTGGAAGCAGCACAGGAGGAAGAAAAATAGGCTACCTGAAGCATGAGGTAATTAACGATTGA 615 45.37 MEEQLLHSQVPFGHHSLLPYLYIPVDQIPYNTPPTFPHFNCQVANCVKGDEQESDQDLGAMKEMMYRIASMQPVDIDPATIPKPKRKNVRFSDDPQSVAARLRREKISEKMRILQRLVPGGTRLDKATMLDEAIRYIKFLRRQIRLLQSNYQPQSINFSLGSSSSTPTDGSLRANGGAASTEPGLGSSTGGRKIGYLKHEVIND 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9555078 9555692 + Bpe002588.1 Bpe10g00254 109376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00254 204 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 49 166 - -
Bpe10g00254 204 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 49 166 IPR045843 GO:0003700|GO:0006355
Bpe10g00254 204 Gene3D - 95 157 IPR036638 GO:0046983
Bpe10g00254 204 Pfam Helix-loop-helix DNA-binding domain 101 140 IPR011598 GO:0046983
Bpe10g00254 204 MobiDBLite consensus disorder prediction 156 187 - -
Bpe10g00254 204 Coils Coil 130 150 - -
Bpe10g00254 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Bpe10g00254 204 MobiDBLite consensus disorder prediction 156 192 - -
Bpe10g00254 204 CDD bHLH_AtIND_like 92 150 - -
Bpe10g00254 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 153 IPR036638 GO:0046983
Bpe10g00254 204 SMART finulus 97 146 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe06g00258 Bpe10g00254 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00258 Bpe-Chr6:13313700 Bpe10g00254 Bpe-Chr10:9555078 3.89E-88 dispersed
Bpe10g00254 Bpe-Chr10:9555078 Bpe10g00678 Bpe-Chr10:13312033 4.01E-31 dispersed
Bpe10g00254 Bpe-Chr10:9555078 Bpe04g00178 Bpe-Chr4:1152051 3.92E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21926 PF00010 HLH 4.50E-08 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00254 - - pop:7479127 186.037