Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00263 TTTTCAACTATTTTTAAATCTCAAGGCATTCATCATCAAGTTTCATGTCCTTACACTGCAAATCAAAATGGACGTATAGAACGTAAAAACTATCATGTCATTCAGACTACACTTGCTTTGCTTTTTCACTCTTCGGTTCCTCAACAATTCAGACACTATGCTTTCGCTACGGCTACTACCTTAATCAATTTGTTGCCCTTAGCAGTTCTTAACCAAAAGTCTCCTTTTGAATGTCTGTTTCACGTCGCTCTGGCCTACTCCTTCGTATGTGTTTTTGACTGTCTATGTTTGGGCTATATATGTCTAGATCCTCAATCAAGCAAAACATATATTTCTCGTCATATCACATTTAATGAGACCTCTTTCCTGTTTACTACCCTCACATCAATAGTTCCACCACAAAAATCTTTCTCCATTCCTATTCTCATTCACATTCCCATTCCAACCCTACCCTTTCCATCTTCCCTACGTCAAAATCTCTCTCTTGAACCTTCCACTACTATACCATCTCATCCTCCCTCTTACTCTTCCCCTCCTTCTCTTGTACTATTGATCAGCCCTCCTTCACCAGCTCACCGCGTTATTATTAATGATCATCCGATGAGAACCAGGTCCAAAGCTTGCATCTTTAAACCCAAGGCTCTTTCAACTGAGCTCGCATTGGAACCCCAGAACTTCCAACAAGCTGCAAAGTCCCTATATTGGTTATCTGCTATGAAGGTCCAAAAGGCACTATTACAATCAGATGTTCAGTCAAAGTCAGATAAAAGTCCGGTTACTGTAGCAGATTATGGTAGGTCACAGGCTCTAGTTAGTTTTGTACTGGAGAAGGAACTTCCTTCTGAATCATTTTCTTTAGTGGCTGAGGAGGATTCAGGAGATCTTCGCAAAGAAAGTGGGCGAGAAACCTTACAGCGTATTACAGAACTTGTAAATGAAACTCTTGCAAGTGATTTAAATTTTAGTGCTTTTATCCTGACGGAAGAAGATGTAGTTAAGGCTATTGACAATGGTAGATCTGAAGGTGGTCCTAATGGTCGACACTGGGTTTTGGACCCCATTGATGGCACTAAAGGGTTTGTAAGAGGGGATCAATACGCAATAGCATTGGCATTGTTGGATGAAGGGAAAGTAGTTTTGGGAGTCCTCGCTTGTCCAAATCTTCCTTTGGCACCACTGAGTAGTAGTCATCAGCCTTCTCCACTCGCTGAAATTGGTTGCCTTTTTTCTGCAAGAGTTGGTGCTGGTACACACATGCAATCCCTTAGTGGTTCTTCATCAATCAAGGTGCACGTCACGGCTACTGAAAATCCTGAAGAAGCATCATTATTTGAATCGTACGAAGCAGCACATTCTATGCATGATTTATCGAGCTCCATTGTTAAAAAACTTGGTGTGAAAGCACCTCCAGTTAGAATCGATAGTCAGGCAAAATATGGGGCTCTTTCTAGAGGAGATGGAGCTGTATATCTTCGCTTTCCTCATAAAGGATACCGAGAGAAAATATGGGACCATGCTGCCGGCTACAGTGTCGTGACAGAGGCTGGTGGAGTTGTGGCAGATGCAGCGGGCAACCCACTGGATTTCTCCAAAGGAAGGTATCTGGACATTCATGTGGGCATAGTTGTTACAAACCAGAAGTTGATGCCTTCACTTCTCAAGGCTGTTCAAAATTCCTTGGATGAGAGAACTTCGTCCTTGTAA 1704 42.25 FSTIFKSQGIHHQVSCPYTANQNGRIERKNYHVIQTTLALLFHSSVPQQFRHYAFATATTLINLLPLAVLNQKSPFECLFHVALAYSFVCVFDCLCLGYICLDPQSSKTYISRHITFNETSFLFTTLTSIVPPQKSFSIPILIHIPIPTLPFPSSLRQNLSLEPSTTIPSHPPSYSSPPSLVLLISPPSPAHRVIINDHPMRTRSKACIFKPKALSTELALEPQNFQQAAKSLYWLSAMKVQKALLQSDVQSKSDKSPVTVADYGRSQALVSFVLEKELPSESFSLVAEEDSGDLRKESGRETLQRITELVNETLASDLNFSAFILTEEDVVKAIDNGRSEGGPNGRHWVLDPIDGTKGFVRGDQYAIALALLDEGKVVLGVLACPNLPLAPLSSSHQPSPLAEIGCLFSARVGAGTHMQSLSGSSSIKVHVTATENPEEASLFESYEAAHSMHDLSSSIVKKLGVKAPPVRIDSQAKYGALSRGDGAVYLRFPHKGYREKIWDHAAGYSVVTEAGGVVADAAGNPLDFSKGRYLDIHVGIVVTNQKLMPSLLKAVQNSLDERTSSL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9901029 9913875 + Bpe002600.1 Bpe10g00263 109385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00263 567 ProSiteProfiles Integrase catalytic domain profile. 1 83 IPR001584 GO:0015074
Bpe10g00263 567 PANTHER PHOSPHATASE 232 564 - -
Bpe10g00263 567 SUPERFAMILY Ribonuclease H-like 1 79 IPR012337 -
Bpe10g00263 567 PRINTS Inositol monophosphatase superfamily signature 500 524 IPR000760 GO:0046855
Bpe10g00263 567 PRINTS Inositol monophosphatase superfamily signature 349 365 IPR000760 GO:0046855
Bpe10g00263 567 CDD PAP_phosphatase 227 558 - -
Bpe10g00263 567 ProSitePatterns Inositol monophosphatase family signature 1. 349 362 IPR020583 -
Bpe10g00263 567 TIGRFAM bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase 238 563 IPR006239 GO:0006790|GO:0008441
Bpe10g00263 567 Pfam Inositol monophosphatase family 255 559 IPR000760 GO:0046855
Bpe10g00263 567 Gene3D - 431 562 - -
Bpe10g00263 567 Gene3D - 223 430 - -
Bpe10g00263 567 SUPERFAMILY Carbohydrate phosphatase 237 561 - -
Bpe10g00263 567 PANTHER BNAA09G06680D PROTEIN 232 564 - -
Bpe10g00263 567 Gene3D - 1 82 IPR036397 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00263 K15422 SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57] - qsu:112009029 531.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00390 Bpe-Chr1:2420989 Bpe10g00263 Bpe-Chr10:9901029 1.40E-30 dispersed
Bpe04g01025 Bpe-Chr4:7260460 Bpe10g00263 Bpe-Chr10:9901029 6.69E-29 dispersed
Bpe08g00181 Bpe-Chr8:998646 Bpe10g00263 Bpe-Chr10:9901029 3.73E-07 dispersed
Bpe10g00263 Bpe-Chr10:9901029 Bpe14g00903 Bpe-Chr14:6721619 4.64E-26 dispersed
Bpe10g00263 Bpe-Chr10:9901029 Bpe11g00497 Bpe-Chr11:3831520 2.58E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1315 . . . Bda10g00403 . . . Bma15g00782 . . Cma03g01102 . Car03g00991 . Sed10g1074 . Cpe10g00329 Bhi03g01336 Tan03g1298 Cmetu08g0340 . Hepe04g1105 . . Cla01g01508 Cam01g1576 Cec04g1220 Cco04g1288 Clacu01g1601 Cmu01g1489 Cre04g1168 . . Cone6ag1270 . Lsi01g01160 . . Cme08g01092 . . . . Bpe10g00263 . . . . Cmo03g01085 . . . . . . . . . . . . . . . . . . . . . . Csa06g02772 Chy02g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009021 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00263 Bpe_Chr10 FPKM 11.283417 11.926407 18.105555 17.675251 8.768383 8.284529 8.681247 21.479931 19.396248 20.835255