Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00264 ATGATGGAACTTACCCCGAAGTTCCGCAACACAGAGATCATCGAACTTCAAAATTTTAAGCCAGCTTTGCTAGATGATGTTGCTAGTGTTCATTCAAAAGCCTATATATATGGTCTTGAGAAGGCTATGGATAAAGCATTACAAGACGGAATTATTTTCATTGACAATACAGGGCCAACATATGCTACTGCAACTACGTATAAGGAGTCGTTACTTGCAGCTGGAGCAGGAATTGCCTTAGTTGACTCAGTGGTTACAGCATCAAAAATCTCTAAGGATCCTCCGATTGGTTTTGCCTTGATTAGGCCTCCGGGACATCATGCAATTCCAAAGGGACCCATGGGCTTTTGTGTTTTTGGCAACATTGCTATAGCGGCCCGTTATGCCCAACGTGCACATGGGTTGAAACGTGTATTTATAATCGATTTTGATGTCCACCATGGAAATGGAACAAATGATGCTTTTTACGATGATCCGGATATATATTTCCTTTCAACTCATCAAGACGGAAGCTATCCAGGTACTGGTAAATTTGACAATGTAGGTTGTGGAAAAGGTGAAGGGATGACCCTAAATCTTCCTCTTCCAGGAGGCTCAGGTGATATCGCCATGAGAACAGTGTTTGATGAAGTGATTGTACCCTGTGCTCAAAGATTTAAGCCTGATATCATTCTTGTTTCAGCCGGGTATGATGCTCATGTGTTGGATCCATTAGCTGGTTTACAATTTACTACCGCGACATATTACATGTTGGCGTCGAGTATTAAACAACTAGCGAAAGAATTATGTGGGGGCCGATCCGTGTTCTTTTTGGAAGGGGGCTATAATCTCAAGTCTCTCTCTAACTCAATCTCGGACTCGTTCCGAGCTTTTCTTGGGGAGCCAAGCATGGCATCCGAGTTTGACGACCCTACGTATTTGTATGAAGAGCCATCGACTAAACTCCAGCGGGCAATTGAAAAGGTGAAGCAAATACACTCCTTATGA 987 42.96 MMELTPKFRNTEIIELQNFKPALLDDVASVHSKAYIYGLEKAMDKALQDGIIFIDNTGPTYATATTYKESLLAAGAGIALVDSVVTASKISKDPPIGFALIRPPGHHAIPKGPMGFCVFGNIAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIYFLSTHQDGSYPGTGKFDNVGCGKGEGMTLNLPLPGGSGDIAMRTVFDEVIVPCAQRFKPDIILVSAGYDAHVLDPLAGLQFTTATYYMLASSIKQLAKELCGGRSVFFLEGGYNLKSLSNSISDSFRAFLGEPSMASEFDDPTYLYEEPSTKLQRAIEKVKQIHSL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9932076 9936460 - Bpe002601.1 Bpe10g00264 109386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00264 328 CDD HDAC_classII 12 292 - -
Bpe10g00264 328 PANTHER HISTONE DEACETYLASE 14 2 327 - -
Bpe10g00264 328 SUPERFAMILY Arginase/deacetylase 12 324 IPR023696 -
Bpe10g00264 328 PRINTS Histone deacetylase superfamily signature 103 126 IPR000286 -
Bpe10g00264 328 PRINTS Histone deacetylase superfamily signature 137 152 IPR000286 -
Bpe10g00264 328 PRINTS Histone deacetylase superfamily signature 221 231 IPR000286 -
Bpe10g00264 328 Pfam Histone deacetylase domain 17 288 IPR023801 -
Bpe10g00264 328 Gene3D Histone deacetylase domain 2 327 IPR037138 -
Bpe10g00264 328 PANTHER HISTONE DEACETYLASE 2 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00264 - - - vvi:100244854 560.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00264 Bpe-Chr10:9932076 Bpe12g00526 Bpe-Chr12:11134637 7.41E-44 dispersed
Bpe10g00264 Bpe-Chr10:9932076 Bpe12g00163 Bpe-Chr12:1235131 2.07E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1318 . . . Bda10g00405 . . . Bma15g00779 . . Cma03g01104 . Car03g00993 . Sed11g1186 . Cpe10g00327 Bhi03g01333 Tan03g1296 Cmetu08g1459 . Hepe04g1102 . . Cla01g01506 Cam01g1574 Cec04g1218 Cco04g1286 Clacu01g1599 Cmu01g1487 . . . . . Lsi01g01162 . . Cme08g01094 . Blo06g00188 . . Bpe10g00264 . . . . Cmo03g01087 . . . . . . . . . . . . . . . . . . . . . . Csa06g02770 Chy02g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007674 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00264 Bpe_Chr10 FPKM 26.20278 28.090065 52.165359 52.169312 87.997681 68.101784 99.15815 73.924652 76.832016 87.763023