Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bpe10g00267	ATGGCCGGCGGCCGCACTATCAGCGTGCTTAACGTGGCGGAGAAGCCGTCCGTGGCCAAATCCGTGGCTTCCATACTTTCCAGGAACCAAGGATTGCGAGTGCGAGAAGGCCGCTCTCGCTACAACAAGATATTCGAGTTCAACTACTCTATTCGGGGACAGCCCTGTCACATGCTCGTAACCTCCGTCACCGGTCACCTCATGGAGCTTGAATTCGAAGAGCGGTACAGGAAATGGAACTCCTGCGATCCCGCGGATCTCTACAGCGCTCCAGTCCAAAAGCTTGTGCCAGAGGTCTCTCCCTCCACTATTTCAAATTCGTTATTTTTTATTTGTTTACTGATTTTGGCATTGAATTTAATATATCAGTTGGCTTCTTGGCGCAAACGTGATGAAAAATGGAGAGGTGTTATCAGTTATGACAAGATAGATATAAAGAGGACATTGGAGGAAGAAGCTCGGCGGTGCCAGTGGCTTGTATTGTGGCTGGACTGTGATAGAGAAGGAGAGAACATTGCATTTGAAGTTATAGAAGTTTGCAGAGCAGTGAATCACCATCTCACTCTTAAGAGGGCTCGCTTCTCTGCATTGATTGATAGAGATATCCATGAAGCTGTGCAAAGTCTTGTTCAACCTAATCAATGGTTTGCTGATGCTGTTGATGCTAGGCAAGAAATAGATCTTCGTATTGGTGCTTCATTTACAAGGTTTCAGACCATGCTGTTGAGAGACAGATTTGTTATTAACACTGCCACAGATGATCGGAATCTAATTTTGAGTTATGGACCTTGTCAATTCCCTACTCTTGGCTTTATTGTGGAACGTTATTGGGAGGTACAATCACACGAGCCAGAAGAGTTTTGGACCATTAACTGTTCACACAACTCAGATGAAGGTGTAGCTACTTTTAACTGGATGAGAGGACATTTGTTCGATTATACTTGTGCTGCTACAATATACGAGATGTGCGTACAGGAACCAACCGCCACTGTCTGTAATGTTAGAAACCAACAAAGACTGAAACATCCTCCACATCCTCTTAATACCATTGAGCTTGAAAAGCGTGCTTCTCGATATTTCCGTATGAGCTCTGAACATACTATGAAGGTAGCAGAAGAACTATACCAAGCTGGTTTCATCAGTTATCCACGTACTGAGACTGATTGCTTTTCTCAGAGGACTGATCTACAAGCAATTGTGCAAGAGCAACAGAACCATCCTATTTGGGGAACATATGCACAACGACTGTTGGATACTGGAGAGGGACTTTGGAGAAATCCAAGCAATGGTGGCCACGATGATAAGGCACATCCTCCTATCCATCCAACAAAGTTTTCTCGAGGAGAAAATGGGTGGAGTCAAGATCACAGTAGGCTTTACGAGCTGGTTGTTCGACATTTTCTAGCATGCGTCTCACAGCCAGCCATAGGAGCTGTGACTACGGTTGAAATTGACATTGCTGGTGAATTGTTTTCAGCTTCGGGGAGAGCAATTATAGCAAAAAATTACTTGGACGTATACTGCTATGAATCGTGGGGAGGATCCATTATTCCAACTTATGTTTCTGGACAACAGTTTACTCCTACAACATTGACACTTGATCCAGGAGTAACAAGACCACCACCGCTTTTGAGTGAAGCTGATTTGTTGAGTTGTATGGATAAGGAGGGTATTGGTACAGATGCAACGATGCATGATCACATAAAGAAGCTATTGGATAGATTTTATGCAACTAAGGACTCAAACACTCATTTCTCACCAACTAATCTTGGAGAGGCGCTGGTATTGGGATACGACGATATGGGGTATAAGTTATGGAAACCATACCTCAGAGCTACTATGGAACGAGACATGAAAGCAGTTAGTGAAGGCAATAAGAGCAAAGCTGAAGTTTTGGCGACTTGCTTGCAGCAGATGAAGGCTTGTTTCTTAGATGCAAGGTTGAATAAAATAAAACTTCTTGAAGCCATGGGTATATTTTTCGAAAGATCCAACAGATCTAGTGTGAATGATCAGCATGCAACAGGAGAAATTGTTCGCCGGTGTGGAGTTTGCCAGGAATTAGATATGGTTCTTAAAAAAATCAGGGATGGCAATTACATGGTTGGCTGCTTGGGATATCCGCAGTGCAGGAACGTTGTATGGCTCCCTGGATCCATATCAGAAGCAGCTGTAACCTCTAACATTTGCGAGTCTTGCACTCCAGGTCCTGTTTACTTGATCCAATTCAAATTTCGCTGCCTGGAAATACCACCAAATTACAACCCTAACCATTTGGGTTGCATAGGTGGTTGTGATGTGATTCTTAGGCAATTGACAGAAATATGTGGAACTGGTCGGGGAGTCGCACAATCTTCCATTGATGTTCCAAGAAGTAACACTAGGCAGGCTGTTTGCATATACTGCCAGCAACCTGGACATTCTTCTAATGACTGCTCTTCTCGGCTTCCCAGCTCCCATCATGCTCAATCACGCGGACAAAGTGAATGTGCAGTTTCATGCAGCACATGTGGGACACCATGCATCATCCGAACTGCTAATACTGCTAATAACAGGGGAAGAAAATTCTACTCATGTCAATCTCAAGAGTGCAACTTCTTTGTATGGGAAGATAGCTTAAACAATGGCACCGGAGGGACCGGTACTTCACGTGCAAGCATGAGGAGTACCCCAGCAGCTAATCCCAGCAGGGGTCGGGGTCGTGGTCGTGGTCGTGGTCGGAGCGGAGCACAAACTCCTTCTACCACTTTCGTATCTGCAACTGGCGAGCCAATATCTGGTAGAAGATGCTTTACTTGTGGTGATCCATCACACTTTGCAAACGCATGCACAAATCGAGGTACC	2844	44.69	MAGGRTISVLNVAEKPSVAKSVASILSRNQGLRVREGRSRYNKIFEFNYSIRGQPCHMLVTSVTGHLMELEFEERYRKWNSCDPADLYSAPVQKLVPEVSPSTISNSLFFICLLILALNLIYQLASWRKRDEKWRGVISYDKIDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNHHLTLKRARFSALIDRDIHEAVQSLVQPNQWFADAVDARQEIDLRIGASFTRFQTMLLRDRFVINTATDDRNLILSYGPCQFPTLGFIVERYWEVQSHEPEEFWTINCSHNSDEGVATFNWMRGHLFDYTCAATIYEMCVQEPTATVCNVRNQQRLKHPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDCFSQRTDLQAIVQEQQNHPIWGTYAQRLLDTGEGLWRNPSNGGHDDKAHPPIHPTKFSRGENGWSQDHSRLYELVVRHFLACVSQPAIGAVTTVEIDIAGELFSASGRAIIAKNYLDVYCYESWGGSIIPTYVSGQQFTPTTLTLDPGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDSNTHFSPTNLGEALVLGYDDMGYKLWKPYLRATMERDMKAVSEGNKSKAEVLATCLQQMKACFLDARLNKIKLLEAMGIFFERSNRSSVNDQHATGEIVRRCGVCQELDMVLKKIRDGNYMVGCLGYPQCRNVVWLPGSISEAAVTSNICESCTPGPVYLIQFKFRCLEIPPNYNPNHLGCIGGCDVILRQLTEICGTGRGVAQSSIDVPRSNTRQAVCIYCQQPGHSSNDCSSRLPSSHHAQSRGQSECAVSCSTCGTPCIIRTANTANNRGRKFYSCQSQECNFFVWEDSLNNGTGGTGTSRASMRSTPAANPSRGRGRGRGRGRSGAQTPSTTFVSATGEPISGRRCFTCGDPSHFANACTNRGT	948

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
10	9961430	9984163	-	Bpe024651	Bpe10g00267	109389

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bpe10g00267	948	Gene3D	Topoisomerase I, domain 3	283	541	IPR013825	-
Bpe10g00267	948	SMART	topIban2	188	289	IPR003601	GO:0003677\|GO:0003916\|GO:0006265
Bpe10g00267	948	Pfam	GRF zinc finger	833	872	IPR010666	GO:0008270
Bpe10g00267	948	PANTHER	DNA TOPOISOMERASE 3-ALPHA	8	107	-	-
Bpe10g00267	948	PANTHER	DNA TOPOISOMERASE 3-ALPHA	138	743	-	-
Bpe10g00267	948	SMART	toprim5	8	185	IPR006171	-
Bpe10g00267	948	ProSiteProfiles	Zinc finger CCHC-type profile.	928	945	IPR001878	GO:0003676\|GO:0008270
Bpe10g00267	948	Pfam	DNA topoisomerase	213	632	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bpe10g00267	948	ProSitePatterns	Prokaryotic DNA topoisomerase I active site.	372	386	IPR023406	GO:0003917
Bpe10g00267	948	MobiDBLite	consensus disorder prediction	877	921	-	-
Bpe10g00267	948	Gene3D	Topoisomerase I, domain 2	219	643	IPR013824	-
Bpe10g00267	948	SUPERFAMILY	Prokaryotic type I DNA topoisomerase	9	642	IPR023405	-
Bpe10g00267	948	ProSiteProfiles	Toprim domain profile.	8	195	IPR006171	-
Bpe10g00267	948	Gene3D	-	2	212	-	-
Bpe10g00267	948	PANTHER	PROKARYOTIC DNA TOPOISOMERASE	8	107	IPR000380	GO:0003677\|GO:0003917\|GO:0006265
Bpe10g00267	948	PANTHER	PROKARYOTIC DNA TOPOISOMERASE	138	743	IPR000380	GO:0003677\|GO:0003917\|GO:0006265
Bpe10g00267	948	Pfam	Toprim domain	10	196	IPR006171	-
Bpe10g00267	948	CDD	TOPRIM_TopoIA_TopoIII	9	209	IPR034144	-
Bpe10g00267	948	Gene3D	Topoisomerase I, domain 4	343	473	IPR013826	-
Bpe10g00267	948	SMART	topIaneu2	335	595	IPR003602	GO:0003677\|GO:0003916\|GO:0006265
Bpe10g00267	948	CDD	TOP1Ac	216	643	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bpe10g00267	948	PRINTS	Prokaryotic DNA topoisomerase I signature	259	277	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bpe10g00267	948	PRINTS	Prokaryotic DNA topoisomerase I signature	557	571	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bpe10g00267	948	PRINTS	Prokaryotic DNA topoisomerase I signature	159	172	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bpe10g00267	948	PRINTS	Prokaryotic DNA topoisomerase I signature	377	386	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bpe10g00267	948	PRINTS	Prokaryotic DNA topoisomerase I signature	459	475	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bpe10g00267	948	MobiDBLite	consensus disorder prediction	877	893	-	-
Bpe10g00267	948	SMART	c2hcfinal6	929	945	IPR001878	GO:0003676\|GO:0008270
Bpe10g00267	948	SMART	c2hcfinal6	798	814	IPR001878	GO:0003676\|GO:0008270

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bpe10g00267	K03165	TOP3; DNA topoisomerase III [EC:5.6.2.1]	-	jre:109018851	1504.58

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bpe02g00226	Bpe-Chr2:1559948	Bpe10g00267	Bpe-Chr10:9961430	1.68E-16	dispersed
	Bpe10g00267	Bpe-Chr10:9961430	Bpe13g00755	Bpe-Chr13:14075056	1.07E-118	dispersed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi4g1325	.	.	.	.	.	.	.	Bma15g00775	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Blo06g00186	.	.	Bpe10g00267	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0007676	1	4	1	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	2	2	2	1	1	1	2	35

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Bpe10g00267	Bpe_Chr10	FPKM	15.752586	16.062355	9.013899	10.402879	12.777746	11.98701	12.531303	26.90626	26.715685	31.094212