Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00277 ATGGGAAAGGAAGATTTGCTACAAAGTACTAACCATAGTGCGAGCAATGGTTGTTGCTCACATAATGATGTAACTGAAAGTAGAGATAGGGAGGCCAGGTCAGCAACATGTCGGGTGTGCCAATGTACAGAGTCTGATAAAAGAGGGGATGCTGTTTTAGGACTTTTGGGCATCACCCTTTCAGAAAGTAAAACCAATAAGAATGTGAAGCTTGACAGCCCTTTAAATGCTAAAAGCTCTCCCTCTAAGCAGAATGATGGAAAGGGATCTAGTGTAGTTGAGTTCATAGGTCCTGATGGTGAGGTTTTTGTTTGTAATGCTGATATAGAAATGGGTTCATGTCTCAGTCAAGATGAGTTGGTCGAACTTGGTTGTTCTTGCAAAAATGACCTTGCGCTTGTACACTATGCATGTGCTCTTAAGTGGTTTATCAGCCATGGATCTACTGTCTGTGAAATCTGTGGTTGTGTTGCAAAAAATATTAGAACAGCTGACTTTAGAAAGGTCGTGGCTTCCTTGAAGGAATATGAAGCCTTAAGAGAAAGGACTGCTAGTGGGGAACCCAATCCTGCTGGGCTGCATGATTCCGACACTAGTATTGATCCCGATGCAGTTGCTGCTATTCGCCGACAAAGACTTAGTGAAATATCCTCGTGGTTTAGTCCCCATAATCGTAATAACCATAACTATATGGCATTCTCGCAGGTTCTTTCTGAACTGCCTCTGAGTTCTGCTACAGGAGACGATGTTCCTGCTGAAAATGCAGCGACAAAGTGGGCTGTTGAATGTACTGGGATTCTTCTTGCAACAGGATTACTTACTGTTACTCTTGCTTGGCTCATAGCTCCTCATGTGGGAAAGAAAACAGCTAGCAGTGGTCTTCATATTCTTCTTGGAGGCATATGCGCTTTAACAGTTGTGGTTTTCTTTCGATTTGTAAGTGCCTGTTACAATTAA 957 42.63 MGKEDLLQSTNHSASNGCCSHNDVTESRDREARSATCRVCQCTESDKRGDAVLGLLGITLSESKTNKNVKLDSPLNAKSSPSKQNDGKGSSVVEFIGPDGEVFVCNADIEMGSCLSQDELVELGCSCKNDLALVHYACALKWFISHGSTVCEICGCVAKNIRTADFRKVVASLKEYEALRERTASGEPNPAGLHDSDTSIDPDAVAAIRRQRLSEISSWFSPHNRNNHNYMAFSQVLSELPLSSATGDDVPAENAATKWAVECTGILLATGLLTVTLAWLIAPHVGKKTASSGLHILLGGICALTVVVFFRFVSACYN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10116558 10118489 - Bpe002613.1 Bpe10g00277 109399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00277 318 MobiDBLite consensus disorder prediction 1 24 - -
Bpe10g00277 318 MobiDBLite consensus disorder prediction 70 91 - -
Bpe10g00277 318 ProSiteProfiles Zinc finger RING-CH-type profile. 103 161 IPR011016 GO:0008270
Bpe10g00277 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 158 IPR013083 -
Bpe10g00277 318 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 312 - -
Bpe10g00277 318 SUPERFAMILY RING/U-box 117 157 - -
Bpe10g00277 318 SMART ringv_2 114 155 IPR011016 GO:0008270
Bpe10g00277 318 Pfam RING-variant domain 118 154 IPR011016 GO:0008270
Bpe10g00277 318 MobiDBLite consensus disorder prediction 1 22 - -
Bpe10g00277 318 MobiDBLite consensus disorder prediction 70 89 - -
Bpe10g00277 318 PANTHER ZINC FINGER, RING-CH-TYPE 19 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00277 Bpe-Chr10:10116558 Bpe08g01389 Bpe-Chr8:14847294 3.73E-09 dispersed
Bpe10g00277 Bpe-Chr10:10116558 Bpe04g01820 Bpe-Chr4:23559370 6.86E-11 transposed
Bpe10g00277 Bpe-Chr10:10116558 Bpe15g01136 Bpe-Chr15:20375473 7.17E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00277 - - pvy:116143051 409.453