Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00280 ATGCTCGACAGGTTAGCTGGTAGACAATTTTATTGCTTTTTGGATGGATATTCAGGTTATAATCAAATTACGATTGTGCCCGAAGATCAAGAGAAAACTACGTTTACATGCCCTTATGGAACTTTCGCATTTCGGAGAATGCCTTTCGGATCCATACCTTTTATTCTAATGTGTAATGTCAACGATTATGCAGTAGGAGTAATGCTGGGACAGAAGAAAGATAAATTATTCCATTCCATCTATTACGCCAGCAAAACACTCAATGATACACAGAAAAACTACACCACTGCAGAGAAAGAGCTACTTGCGGTAGTCTTTGCTTTCGATAAATTCAGGGTGTATTTGATAGGAACAAAGGTTATTGTGTACACTGATCATGCAGCCATCAAGTATCTAGTTACGAAAAAGGATGCAAAACCAAGACTACTTCGCTGGGTGTTACTTCTTCAAGAGTTTGATTTGGAAATCCGCGATAGAAAAGGGTGCGAGAATCAAGTTGCAGATCATTTATCTCGTCTGGAAAATGGGAACAAACAGCAACCTGGAGAAAGCATAAAAGAAACATTTCCAGATGAACAGCTGCTGAAAGCGGATGTATATTCAGTGCCATGGTATGCAGACTTTGGGAACTACATTTTGCTGCGGGAAATAACACATGAAAATGTTGTGAAGCTGGTGAACGTCCACATTAATCCCGCAGATATGTCCCTGTATCTGGCCTTTGATTACGCAGAACATGACCTCTATGAAATTATTAGACATCACAGGGACAAGGTCAACCATTCCATTAATCATTACACTGTAAAATCATTGTTGTGGCAGCTGCTTAATGGCCTGAACTATCTTCATAGTAATTGGATCATTCACCGTGATCTAAAGCCCTCAAATATTTTGGTTATGGGAGAGGGAGAAGAGCAGGGTATTGTTAAAATAGCTGATTTTGGCCTTGCGAGAATATACCAAGCCCCCCTTAAACCATTATTTGACAATGGGGTTGTTGTAACCATCTGGTATCGTGCTCCTGAGCTACTCCTAGGAGCAAAGCACTATACAAGTGCTGTTGATATGTGGGCTGTTGGGTGCATTTTTGCAGAGCTTTTGACACTGAAACCGCTCTTTCAAGGATCAGAAGTTAAAGGGACACCAAATCCTTTCCAGATATTATCTAATAATACTATTTTCCACATTAATGTTGTAGGCCATCCCACAATCGATAAGTGGCCAACACTTGCAAATCTTCCACATTGGCAACAAGATGTCAAACATATTCAAGGTCTTAAGTATGATAATGCTGGACTTTATAGTGTTGTTCATCTTTCTCCTAAAAGTCCCGCGTACGATCTCCTATCAAAGATGTTAGAATATGATCCCAGAAAACGTATAACGGCAGCACAAGCTCTGGATCATGAGTATCTCCCATTGACTATGGTAATGTGCAGTGCCTTGGTGCCCAACCAACCTGGGGAGAAGATTGTAAATTACCCTACTCGTCCTGTAGACACAACTGCTGATTTTGAGGGAACAACAAGCCTTCAACCCACTCAATCGGTATCATCGGGAAATCAAGTTTCTGGGAATGTGCAGGGTGCTCATGTAGTGGCAAACAGGTCTGTCCCTCGGGCTATGTCCATGGTTGCCATGCAGAGGATGCAATCTCAAGGCATGACTCAAGGCATGACGGCTTATAATCTTGCATCTCAGGCTGGGATGGGTGGTGGTATGAATCCTAGCGGCATTCCAATGCAACGTGGTGTTTCTGCTCAGACCCACCAGCAACAACAGCAGTTGAGGCGCAAAGACCCCGGAATGGGGATACCTGGATACCCACCACAGCAGAAATCAAGACGCATGTGA 1854 42.61 MLDRLAGRQFYCFLDGYSGYNQITIVPEDQEKTTFTCPYGTFAFRRMPFGSIPFILMCNVNDYAVGVMLGQKKDKLFHSIYYASKTLNDTQKNYTTAEKELLAVVFAFDKFRVYLIGTKVIVYTDHAAIKYLVTKKDAKPRLLRWVLLLQEFDLEIRDRKGCENQVADHLSRLENGNKQQPGESIKETFPDEQLLKADVYSVPWYADFGNYILLREITHENVVKLVNVHINPADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINHYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGIVKIADFGLARIYQAPLKPLFDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGSEVKGTPNPFQILSNNTIFHINVVGHPTIDKWPTLANLPHWQQDVKHIQGLKYDNAGLYSVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALDHEYLPLTMVMCSALVPNQPGEKIVNYPTRPVDTTADFEGTTSLQPTQSVSSGNQVSGNVQGAHVVANRSVPRAMSMVAMQRMQSQGMTQGMTAYNLASQAGMGGGMNPSGIPMQRGVSAQTHQQQQQLRRKDPGMGIPGYPPQQKSRRM 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10134916 10156274 - Bpe002616.3 Bpe10g00280 109402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00280 617 SUPERFAMILY DNA/RNA polymerases 2 164 IPR043502 -
Bpe10g00280 617 PANTHER CYCLIN-DEPENDENT KINASE E-1 211 616 - -
Bpe10g00280 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Bpe10g00280 617 Gene3D - 1 20 IPR043128 -
Bpe10g00280 617 SUPERFAMILY Protein kinase-like (PK-like) 212 472 IPR011009 -
Bpe10g00280 617 Pfam RNase H-like domain found in reverse transcriptase 53 152 IPR041373 -
Bpe10g00280 617 Gene3D - 55 123 - -
Bpe10g00280 617 Gene3D Transferase(Phosphotransferase) domain 1 244 472 - -
Bpe10g00280 617 ProSiteProfiles Protein kinase domain profile. 108 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe10g00280 617 MobiDBLite consensus disorder prediction 571 617 - -
Bpe10g00280 617 Gene3D Phosphorylase Kinase; domain 1 213 243 - -
Bpe10g00280 617 SMART serkin_6 110 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe10g00280 617 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 21 50 - -
Bpe10g00280 617 MobiDBLite consensus disorder prediction 581 598 - -
Bpe10g00280 617 CDD RNase_HI_RT_Ty3 55 173 - -
Bpe10g00280 617 Pfam Protein kinase domain 213 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe10g00280 617 PANTHER CELL DIVISION PROTEIN KINASE 211 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00280 Bpe-Chr10:10134916 Bpe13g00523 Bpe-Chr13:12528385 1.28E-51 dispersed
Bpe12g00323 Bpe-Chr12:6924187 Bpe10g00280 Bpe-Chr10:10134916 1.17E-26 dispersed
Bpe10g00280 Bpe-Chr10:10134916 Bpe04g01919 Bpe-Chr4:24144143 5.74E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63526 PF00069 Pkinase 1.60E-53 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00280 K02208 - csv:101203984 645.195