Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00364 ATGCTTGGACTGCTGGAATTTTTGTACGCCAATTGGCTAGATATTCGTGCGAACTACCTGGCCCCGCCGCTACAGAGCTTGACCAATGTGTGCATTGTCTTGTTCTTGATGCAATCGGTGGATCGAATAGTTTTGATGGTTGGATGCTTTTGGATCAAGTCCCGGAGAATGAAGCCTAAGTCGGCGATGGAATATCCTTCCAGCGACGGCAATGTGAACATCGAGGATTATCCGTTCGTCCTGGTACAGATTCCCATGTGCAATGAGAGGGAGGTTTACCAACAATCTATTGCAGCCGTTTGTATCCAGGATTGGCCAAAGGAGAAAATGCTTGTACAGGTTTTGGATGATTCTGATGAACAAGATGTTCAACTGCTTATTAAGGGAGAAGTGCAAAAATGGCAACAAAGAGGTGTTCGGATACTGTATAGACATCGTCTCCTACGCACTGGATACAAGGCTGGAAATCTCAAATCAGCTATGGGTTGTGATTATGTAAAAGATTATGAGTTTGTCGCCATCTTTGATGCAGATTTTCAACCAGGCCCTGACTTTTTAAAGAAAACCATACCACACTTTAAGGGAAATCATGATCTAGCATTGGTCCAGACAAGGTGGGCATTCGTAAACAAGGATGAGAACTTGCTCACGAGACTGCAGAACATTAATTTATCATTCCATTTTGAGGTCGAACAACAAGTCAATGGTGTGTTTCTCAACTTTTTTGGTTTCAATGGAACTGCTGGTGTGTGGAGAATCAAAGCTCTTGAGGAATGTGGTGGCTGGTTGGAAAGGACAACTGTTGAGGACATGGATATTGCAGTCCGCGCACATCTTCATGGGTGGAAGTTCATATATTTGAATGATGTTAAGTGTCTTTGTGAACTTCCAGAGTCCTATGAGGCATACAAGAAACAGCAACATCGCTGGCATTCTGGTCCAATGCAGTTGTTTCGGTTGTGTTTCCTCGATGTAAGCTGCGCAAAAAAGGCCAACCTGATATGTCTTTTCTTCCTCCTCCGAAAGCTTATCCTCCCCTTTTATTCTTTCACACTTTTTTGCGTCATTCTCCCATTGACCATGTTCCTTCCAGAAGCTCAAATACCTGCATGGGTTGTTTGCTATGTACCTGGAATCATGTCTATCTTAAATATTCTTCCAGCACCGAGATCATTTCCTTTTATAGTCCCTTACCTTCTGTTTGAGAACACCATGTCTGTAACCAAGTTCAATGCAATGATATCCGGATTGTTCCAATTTGGGAGTTCTTATGAATGGATCGTTACAAAGAAGTTGGGAAGATCATCGGAGACTGATTTAGTTGCCTTCGAAAAAGAGTTGGATCTGCAAACGGAAACTACTAGCCTTCTCCGATCATCCTCTGATTCAGGTCTTCAAGAGCTCAGTAGGATAGAGATGTCTAAGAAAACTGGGAAGTCCAGAAAAAATGGTCTGTACAGAAAGGAACTTGCCCTTGCATTTATTTTGTTGACCGCATCTGTGAGAAGTCTACTGTCTGCTCAAGGAATACACTTCTACTTTCTCCTATTTCAAGGGATCACATTTTTAGTCGTTGGTCTTGATTTGATAGGGGAGCAGGTTAGTTGA 1608 42.66 MLGLLEFLYANWLDIRANYLAPPLQSLTNVCIVLFLMQSVDRIVLMVGCFWIKSRRMKPKSAMEYPSSDGNVNIEDYPFVLVQIPMCNEREVYQQSIAAVCIQDWPKEKMLVQVLDDSDEQDVQLLIKGEVQKWQQRGVRILYRHRLLRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNHDLALVQTRWAFVNKDENLLTRLQNINLSFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLHGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFLDVSCAKKANLICLFFLLRKLILPFYSFTLFCVILPLTMFLPEAQIPAWVVCYVPGIMSILNILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFQFGSSYEWIVTKKLGRSSETDLVAFEKELDLQTETTSLLRSSSDSGLQELSRIEMSKKTGKSRKNGLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVS 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11229531 11234081 - Bpe002707.1 Bpe10g00364 109486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00364 535 PANTHER - 2 534 - -
Bpe10g00364 535 Pfam Glycosyl transferase family group 2 172 373 IPR001173 -
Bpe10g00364 535 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 2 534 - -
Bpe10g00364 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 69 296 IPR029044 -
Bpe10g00364 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 77 353 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00364 - - - jre:109008513 955.281
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00193 Bpe-Chr8:1088769 Bpe10g00364 Bpe-Chr10:11229531 1.16E-141 dispersed
Bpe08g01287 Bpe-Chr8:14239773 Bpe10g00364 Bpe-Chr10:11229531 9.68E-140 dispersed
Bpe10g00364 Bpe-Chr10:11229531 Bpe02g00750 Bpe-Chr2:5231777 8.94E-136 dispersed
Bpe10g00364 Bpe-Chr10:11229531 Bpe06g00415 Bpe-Chr6:15540307 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00069 . 595 755 REM Transcription Factor Family AT1G49480 68.9 2.9e-56 215.3
Bpe15g00884 . 225 396 REM Transcription Factor Family AT1G49480 65.1 4.9e-56 214.5
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe12g00069 . 595 755 REM Transcription Factor Family AT1G49480 68.9 2.9e-56 215.3
Bpe15g00884 . 225 396 REM Transcription Factor Family AT1G49480 65.1 4.9e-56 214.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00364 Bpe_Chr10 FPKM 24.777687 24.778402 4.059515 4.377376 5.380361 5.161022 5.420977 0.75595 0.8796 1.233425