Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00378 ATGGAAGAGGTTGAGGAGGCTAACAAGGCAGCTGTTCAGAGCTGCCATAGATTATTAAATCTACTAGCTCAACCCCAAGATGAAGTCCAGTACAGAGATTTAATGGTGGAAACTGGGGAAACTATTTATAAGTTTAAGAAAGTCGTGTCTATTCTTAACGTTGGTTTGGGTCATGCAAGAGCCAGAAAACTCAAGAAATTCCATACCCCTTTTCCTCAAACCATCTTTTTAGATAACCCTAATTGCAGATTAGACCATCAAAACAAAACCCTCCAGCTTGATTCTCTGAGCCTCGGAACCCCATCTTTGGAATTGAGCTCAAATGGGAAAACCCCTCTTCAAATTTCTCAACAAACACTTCCCTCCCTCCATCACTTCCTTCATCAGCAACACCAACAGAAGTTGTTTCTTCAGCAGCAACAGATGAGTAATCAGCAGGCGGAAATGATGTTTCGCGGGAGTAACAGTGGGGTGAACTTGAACTTCGATGGGTCTACTTCCACGCCGACTATGTCATCAACAAGGTCTTTCATTTCTTCCTTGAGCGTCGATGGAAGTGTGGCCAATATCGATGGAAGTGCCTTCCATTTGATCGGGGCTACTCGATCTCTGGATCAGACATCTCAGCATAACAGGAAATGCTCTGCCATGGCCGATGACGGGAGTGTTAAATGTGGAAGCAGTGGGAGATGCCACTGCTCGAAGAAGAGGAAACACAGGGTGAAAAGATCAATCAAAGTACCCGCTATTAGTAACAAGCTTGCAGATATTCCTCCTGATGATTATTCATGGAGAAAATATGGCCAAAAGCCCATCAAGGGTTCTCCTCACCCAAGGGGATATTATAAGTGTAGCAGCATGAGAGGTTGCCCAGCGAGGAAGCACGTGGAGAGATGTTTAGAGGACACGTCAATGCTCATCGTTACATACGAAGGAGATCATAATCACCCGAAGGCACCTTCTCAACCTGCAAATACATGA 981 44.85 MEEVEEANKAAVQSCHRLLNLLAQPQDEVQYRDLMVETGETIYKFKKVVSILNVGLGHARARKLKKFHTPFPQTIFLDNPNCRLDHQNKTLQLDSLSLGTPSLELSSNGKTPLQISQQTLPSLHHFLHQQHQQKLFLQQQQMSNQQAEMMFRGSNSGVNLNFDGSTSTPTMSSTRSFISSLSVDGSVANIDGSAFHLIGATRSLDQTSQHNRKCSAMADDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDTSMLIVTYEGDHNHPKAPSQPANT 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11362242 11363576 - Bpe002719.1 Bpe10g00378 109500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00378 326 Pfam WRKY DNA -binding domain 260 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe10g00378 326 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe10g00378 326 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe10g00378 326 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 95 IPR044810 GO:0003700
Bpe10g00378 326 Pfam Plant zinc cluster domain 212 256 IPR018872 -
Bpe10g00378 326 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 111 326 - -
Bpe10g00378 326 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 95 - -
Bpe10g00378 326 SUPERFAMILY WRKY DNA-binding domain 256 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe10g00378 326 Gene3D WRKY domain 243 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe10g00378 326 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 111 326 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00378 Bpe-Chr10:11362242 Bpe02g00606 Bpe-Chr2:3946555 7.24E-58 dispersed
Bpe10g00378 Bpe-Chr10:11362242 Bpe06g00434 Bpe-Chr6:15726359 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21935 PF03106 WRKY 1.00E-25 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00378 - - fve:101300971 482.641