Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe10g00393 | ATGAAACGTGCTGCATTTTACAAACTGTATAAAATGCCACTTTCTCTTGGAGCTTCTCTTCGTCTACTCTCTTTGGTCTCTTTATGCAGTTGGAAGCTAACCCCAGCCCGGAACTCTGAGAAAAATCAATCTTGTTCTCTCCATACTTCTGCTCACTTCCTCCTTCTTGCATGTAAATGCTATTTGCAACCTCTTGTTCTTTTTTTGCCTCTCGTTTTGGCTCCACCGAGTCATTTCATGGCGAATAATCCGTCCGAGGCTGCAACCGACGATTTCTTAGAGCAAATTCTAGGTATTCCTGCTTTCGCTTCGGCTGACTCAGGCCTGAATGGAAATGATGGCGGCTTGTCCGCTGCTCATGGTTCGATGATGCTGCAGCTTAGCTCTGGCGATGGCTCTGGCCATATGGCCCCCGTTGGTGGCGGTAGCGTTGGTGGCCCGGGGTTTCATACTTCTGGCTTTCCCTTGGGGTTGAGCTTGGAGCAGGGAAAGTGTGGGTTTCTGAAGCCTGAAGAGGCATCCGGAAGCGGTAAGCGGTTCTGTGGCGAGGTCGTCGATGGCCGAGGTTCATCCGTGAAAACTGTTTTCCAAGGCCAACCAATTACCACCAATGTTGCTGGAGCACCACATCCTCCAGCAATGCGACCAAGAGTAAGAGCTAGACGAGGACAAGCTACAGATCCCCATAGTATAGCTGAAAGGTTGCGCAGAGAAAGAATTGCAGAGAGGATCAGGGCATTGCAGGAACTGGTTCCTAGTGTCAACAAGACAGATAGAGCTGCCATGCTTGATGAAATAGTAGATTATGTAAAGTTTCTGCGACTCCAAGCGAAGGTTTTAAGCATAAGTAGATTGGGAGGTGCTGGGGCAGTAGCACCTCTTGTAACTGACATTCCATTATCATCACTGGAGGACGATGGAAGTGAAGGTGGAAGAAATCAACCAGCCTGGGAAAAGTGGTCAAATGATGGCACAGAAAGACAAGTAGCTAAGCTTATGGAAGAAAATGTTGGTGCTGCCATGCAATTTCTTCAGTCCAAGGCTCTTTGCATCATGCCCATTTCCTTGGCCTCAGCAATCTACCACACCCAACCAGCCGACACATCCAGTGTCGTCAAGCCTGAGACAAACCCACCTTCCTAG | 1143 | 48.82 | MKRAAFYKLYKMPLSLGASLRLLSLVSLCSWKLTPARNSEKNQSCSLHTSAHFLLLACKCYLQPLVLFLPLVLAPPSHFMANNPSEAATDDFLEQILGIPAFASADSGLNGNDGGLSAAHGSMMLQLSSGDGSGHMAPVGGGSVGGPGFHTSGFPLGLSLEQGKCGFLKPEEASGSGKRFCGEVVDGRGSSVKTVFQGQPITTNVAGAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQAKVLSISRLGGAGAVAPLVTDIPLSSLEDDGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPADTSSVVKPETNPPS | 380 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 11477617 | 11481633 | + | Bpe002736.1 | Bpe10g00393 | 109515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe10g00393 | 380 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 86 | 370 | - | - | |
| Bpe10g00393 | 380 | Pfam | Helix-loop-helix DNA-binding domain | 229 | 273 | IPR011598 | GO:0046983 | |
| Bpe10g00393 | 380 | SMART | finulus | 230 | 279 | IPR011598 | GO:0046983 | |
| Bpe10g00393 | 380 | Gene3D | - | 217 | 274 | IPR036638 | GO:0046983 | |
| Bpe10g00393 | 380 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 224 | 273 | IPR011598 | GO:0046983 | |
| Bpe10g00393 | 380 | MobiDBLite | consensus disorder prediction | 303 | 323 | - | - | |
| Bpe10g00393 | 380 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 222 | 281 | IPR036638 | GO:0046983 | |
| Bpe10g00393 | 380 | MobiDBLite | consensus disorder prediction | 206 | 228 | - | - | |
| Bpe10g00393 | 380 | PANTHER | TRANSCRIPTION FACTOR UNE12 ISOFORM X1 | 86 | 370 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe06g00444 | Bpe-Chr6:15792577 | Bpe10g00393 | Bpe-Chr10:11477617 | 1.48E-156 | dispersed | |
| Bpe09g00634 | Bpe-Chr9:15007611 | Bpe10g00393 | Bpe-Chr10:11477617 | 5.28E-77 | dispersed | |
| Bpe10g00393 | Bpe-Chr10:11477617 | Bpe13g01167 | Bpe-Chr13:17101286 | 2.27E-56 | dispersed | |
| Bpe10g00393 | Bpe-Chr10:11477617 | Bpe11g01332 | Bpe-Chr11:9959231 | 4.56E-99 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 21939 | PF00010 | HLH | 1.60E-07 | No_clan | Bpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe10g00393 | - | - | zju:107425922 | 461.455 |