Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00431 ATGCTTCGTTGGGGAGGTCTAACTTGCTGTTTGAGTGCAGCTGCTCTTTACCTACTCGGAAGGAGTAGCGGGAGGGATGCGCACCTGTTGAATTCTGTCCCACGAGTTAATCAATTGAAGGAGCTGGCACAATTACTTGATGCTGAGTGTATATTGCCTTTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATGCCCCGATAAACTGTGAGTTCAGTGGGTTACGAGGTGTAATTGTGGAGGAAACGGCAGAACAACATTTTCTGAAACACAATGATACCGGTTCATGGATACAAGATTCAGCCTTAATGTTGTCCATGAGTAAAGAGGTCCCCTGGTACTTGGATGATGGCACAGGTCGTGCATTTGTGGTAGGAGCTCGAAATGCCACAGGCTTTATATTGCCAATAGCAAGTGAGGTTTTTGAAGAATCTGGTCGATCTCTTGTGCGAGGAACATTAGATTATCTCCAAGGTCTTAAGATGCTTGGTGTGAAGCGAATTGAGAGGGTATTGCCAACTGGTACTTCTTTGACTGTGGTTGGCGAGGCAGTCAAGGATGACATTGGTACCATTCGAATTCAGCGACCCTACAAAGGGCCATTTTATGTCTCCCCAAAACCGATTGATCAACTCATTGCTAATCTTGGGAAGTGGGCAAGGTGGTACAAGTATGCGTCGATGGGTTTGACAGTGTTTGGCCTGTATCTAATTGCCAAGCATGCTATCCACTTTATCTTAGAAAGGAGGCGATGTTGGGATTATCAAAGAAGGGTTTTGGCTGCTGCAGCGAAGCGATCGAGTCAAGAAAATGAAGGTTCAACCGAAAGGGCAGACAAGGCAGCTGATGGTACTAAGAGAGACCAGTTGATGCCAGATCTTTGTGTGATATGCCTTGAGCAAAATTATAATGCTGTTTTCGTCCCGTGTGGACACATGTGCTGCTGTACGACATGCTCCTCCCACCTGACCAATTGTCCCCTTTGCAGACGAAGAATTGAACAGGTAGTGAAAACGTTCCGCCATTGA 1029 46.06 MLRWGGLTCCLSAAALYLLGRSSGRDAHLLNSVPRVNQLKELAQLLDAECILPLVVAISGRVSSDAPINCEFSGLRGVIVEETAEQHFLKHNDTGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARNATGFILPIASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAVKDDIGTIRIQRPYKGPFYVSPKPIDQLIANLGKWARWYKYASMGLTVFGLYLIAKHAIHFILERRRCWDYQRRVLAAAAKRSSQENEGSTERADKAADGTKRDQLMPDLCVICLEQNYNAVFVPCGHMCCCTTCSSHLTNCPLCRRRIEQVVKTFRH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11732568 11736872 + Bpe002772.1 Bpe10g00431 109553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00431 342 CDD RING-HC_LRSAM1 294 333 - -
Bpe10g00431 342 SUPERFAMILY RING/U-box 289 336 - -
Bpe10g00431 342 Pfam E3 Ubiquitin ligase 86 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Bpe10g00431 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 336 - -
Bpe10g00431 342 PANTHER - 1 309 IPR044231 GO:0004842|GO:0016567
Bpe10g00431 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 341 IPR013083 -
Bpe10g00431 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00774 Bpe-Chr4:4972628 Bpe10g00431 Bpe-Chr10:11732568 1.81E-06 dispersed
Bpe10g00431 Bpe-Chr10:11732568 Bpe15g01040 Bpe-Chr15:19761627 5.50E-08 dispersed
Bpe10g00431 Bpe-Chr10:11732568 Bpe08g00185 Bpe-Chr8:1016891 6.63E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00431 K15688 - qsu:111998754 611.298