Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00477 ATGGCGAAAATGGGCGTGTTTGATTCTGATCCGGCGTTGATTTTGAAGACCACTGAATTGAAGAGGGAGTTTCAGAGATTGGTTACGGCTATTATTGACGACGATGATTACAGTGCGGAGGCTGTCGATCAGGCGAAGGAGGCTTTGTGTGCTTTGGAGCGGTTGAAGCTCAGAAAGAGGTCGCTATCGTGGAAGTCCGTGGAGGCTCTGTGCTGTCCCGATGAGTTTCGGTGTCCTCTTTCTAAGGACTTAATGAGGGATCCCGTCGTAGTGGCCTCCGGCCAGACTTTCGACAGACCCTTCATCCAGCAATGGTTAAAAACAGGAAACCGGATTTGCCCTCGTACCCAACAAGTCCTCTCCCACACAATCCTTGTTCCTAATCATTTGATTCGGGAAATGATATCTCAATGGTGTATCACTCGAGGAATTGAAATCTCCGAGCCTGTTAATTATCTCACCGATGAAGGGGTGATAACAGATTCAGATCGAGATCATTTTCTTTGTCTGCTCGAGAAAATGTCGTCAACAATATCCAATAAAAAAACAGCAGCCAAAGAACTTCGATTGTTGACAAAGAGAATGTCCTCATTCCGGGTGCTTTTTGGGGAGTTTGAAGATGCAATTCCATTGTTACTTACCCCACTATCTGAAGGCAGGTCTCAAGGAAATTGCAATGCCGAACTCCAAGAAGATGTCATCGCCACACTTTTAAATCTATCAATCCATGACAACAATAAGAATATCGTTGCTCAAATCCCATCTGTATTTCCTCTGCTTATTGGAGCATTGAGAACCGGAACCACAGAAACTCGGAGAAATGCAGCTGCAGCCCTCTTCACCTTGTCGGCTGTTGATTCGAACAAGTCGCTAATCGGAAAATCAGGTGCTTTGAAACCTCTTATTGAGCTTTTGGAAGAGGGCGATTCATTAGCTGTGAAAGATGCCTCTTCGGCAATATTTAATGTATGTATCCTCCAAGAGAACAAGGCAAGGGCTGTAAGGGATGGAGCTATCAGGGTCATATTGAAGAAGATCACCGACTGTGTGAATGTGGATGAGTTGTTGGCTCTCCTAGCGATGCTTTCAACCCATCCACGGGCTGTTGAGGAAATGGAAGATCTTGGAGCTGTTTCTTGCTTGCTCGGCACTATGAGAGAGACCACTTGTGCACGAAACAAGGAAAATTGTGTTGCAATCCTCTACATCATCTGTTTTTATGACCGGACAAAGTGGAAGGAAATAAGGGACGAGGAAAATACTTATGGAACAATCTCAGAGCTAACTCGGAACGGAACATCGAGGGCCATGAGAAAGGCCGCTGGAATTCTCGAGAGACTGAACAGGGCTGTTAATATTACGCATACTGCATAG 1374 45.41 MAKMGVFDSDPALILKTTELKREFQRLVTAIIDDDDYSAEAVDQAKEALCALERLKLRKRSLSWKSVEALCCPDEFRCPLSKDLMRDPVVVASGQTFDRPFIQQWLKTGNRICPRTQQVLSHTILVPNHLIREMISQWCITRGIEISEPVNYLTDEGVITDSDRDHFLCLLEKMSSTISNKKTAAKELRLLTKRMSSFRVLFGEFEDAIPLLLTPLSEGRSQGNCNAELQEDVIATLLNLSIHDNNKNIVAQIPSVFPLLIGALRTGTTETRRNAAAALFTLSAVDSNKSLIGKSGALKPLIELLEEGDSLAVKDASSAIFNVCILQENKARAVRDGAIRVILKKITDCVNVDELLALLAMLSTHPRAVEEMEDLGAVSCLLGTMRETTCARNKENCVAILYIICFYDRTKWKEIRDEENTYGTISELTRNGTSRAMRKAAGILERLNRAVNITHTA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12036931 12039006 - Bpe002810.1 Bpe10g00477 109599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00477 457 Pfam Armadillo/beta-catenin-like repeat 288 324 IPR000225 GO:0005515
Bpe10g00477 457 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Bpe10g00477 457 PANTHER U BOX DOMAIN-CONTAINING 6 455 - -
Bpe10g00477 457 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Bpe10g00477 457 Gene3D - 167 453 IPR011989 -
Bpe10g00477 457 SUPERFAMILY RING/U-box 72 148 - -
Bpe10g00477 457 Pfam U-box domain 73 140 IPR003613 GO:0004842|GO:0016567
Bpe10g00477 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Bpe10g00477 457 SUPERFAMILY ARM repeat 177 447 IPR016024 -
Bpe10g00477 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 455 - -
Bpe10g00477 457 SMART arm_5 285 325 IPR000225 GO:0005515
Bpe10g00477 457 SMART arm_5 365 406 IPR000225 GO:0005515
Bpe10g00477 457 SMART arm_5 245 284 IPR000225 GO:0005515
Bpe10g00477 457 CDD RING-Ubox_PUB 76 118 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00300 Bpe-Chr9:2415815 Bpe10g00477 Bpe-Chr10:12036931 0 dispersed
Bpe09g00671 Bpe-Chr9:15315937 Bpe10g00477 Bpe-Chr10:12036931 5.71E-99 dispersed
Bpe10g00477 Bpe-Chr10:12036931 Bpe11g01291 Bpe-Chr11:9653012 5.94E-100 dispersed
Bpe10g00477 Bpe-Chr10:12036931 Bpe06g00548 Bpe-Chr6:16517917 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00477 - - zju:107426793 644.81