Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00548 ATGTGCGGGGGTACAGAGCAATCACAATTTGCGTCTACTCATTCTTCATCTATTACAGAAACTGAAACTAACGCAAGAGTTATGAATCACCTGATCATAGAAACAGATAATTCTTTTTATAGCTTACTGGAATTTGCTTCTGACAATAATGCAAAAGGCATTAAGAAATTTGTTGATCATGATGTGTCTTCCCTTAATAGAAAAGGACTTTGGTATATTCGGCCGAAAGGATCAAAACAAGTCATCTGTGACTGGAGAACTCCGTTGATGGTCGCCGCTACATATGGTAGTGTGGATGTTTTGAACCTTATTCTTTCATACTCTGAGGTCAATGTAAATCTATCATGTGGTCGGGATAGAAGCACTGCTCTTCACTGTGCTGCTTCTGGCGGATCCATTAATGTAGTTGAAGTTATTGTACTACTTTTATCATCTGGTGCAGATCCAAAGTGTGTGGATGCTAGTGGTAATCGACCTATTGATGTTATCTTTGTTCATCCAAAAATAAAAAGCATGGGGGTGAAACTTGAGGATCTTCTCAAAATCAATACTTACAACACATCTTTTAATTTGCCCTTACCCATTGAGACCTTGGGGGCAGTGAGGGCAGTGTCACCTATTCGTTCATCATCAGTAGAGAATGTCTCATCTCCCTCTCTGTTTACATCCTCCCCCGTGGCGTTGAAATGCAATGATGGTAGACTGAATTCGGCTGCAGAGAAGAAAGAGTACCCAGCAGACCCATCTCTCCCTGATATTAAGAGTAGCATGTATGCAACAGATGAGTTTCGAATGTTCTCATTCAAAGTACGACCTTGTTCGCGAGCATATTCTCATGACTGGACTGATTGCCCTTTTGTCCATCCAGGAGAGAATGCTCGGCGAAGAGATCCAAGGAAGTACCATTACAGCTGCATGCCTTGCCCTAATTTCAAGAAAGGGCCTTGCAGGCATGGTGATAAGTGTGAATATGCACACGGAGTGTTTGAGAGCTGGCTCCATCCTGCTCAATATCGAACTCAGCTTTGTAAGGATGGAACAAGTTGCAATAGGAGAGTTTGCTTTTTTGCACACACAATCAAGGAGCTCCGTCCTTCACATCTTTCAATTGGATCAGGTGGAAATTCAGTGCACTGCAATTCATCTCCTTCCAATGTAACTGACATGGTAACTGCAATTAGCCATTGGCCTGGTTTCCCTTCATTAGTGTCTGGCTCGTCTCTTTCCCCTTCTAGCTCGGGTCTGTCTCCCTCTGTGAATGGTGTATCACAATCAATTTCCTGGCCTCAACCAAGTGTTCCGTCCATTCATCTGCCTGGAAGCAATCTCCAATCAAGTCGCTTGAGTTGTTCTCTTGGCTCCCGAAATAGACCTTGTGGGGATTCAAATATGATACCAGAATTTGACTCTGTTCAACAGATTTCGAATGACTTGACCTGTTTCTCACGATCCCAGATGAATTTCGAATCTATTGTGCGTTCTAAAATGCAGCCTCCTTCAAACATTGATGACGTCTATACTTCTCATATCTCATCATCACCCAAATTTCCTGACCCTGCTACAACGTCCATCTTTTCCCTGACACACCAATCAATTTCACTGAATCAATGTAGGAAGCAGAAGCAAATGCCAACTCCTGTAAATGAAAGTATTTTGTCTCCAAGAAGTGTTGATTATCCTCTATTGCAGGCTTCTTTTGAACTCTCATCAAGGAGAAGAATGTTGCTAAGAAATGTGGAACCGTCCCCAGTAACTTCTCGATTCTCTGCTTATGCTCTAGAAGACATGCAGCATCAGCCACTTCGTAGTTTGGTCTCTAGAGACCTGGCAACTAACGTTATTGCATCTCCTCTTATGTGCTCTTCAAATTCTTGGCCTAAATGCGGATCTCCAGAAGAGGTAGATTGGTCTGTGAATGGGGATGATTTGGCTCTGTTTGAGAGATCGAAGCTCAAGAAAAATGCGGAAGAGCCTGACCTGTCATGGATCCAAACGCTGGTGAAGGAACCTCCACCAGAGATGATACATTATGTTCTTATCGCTTGGCTTGAGAAGATGCAGCTTGATCAGATTACAGTCTAA 2082 42.89 MCGGTEQSQFASTHSSSITETETNARVMNHLIIETDNSFYSLLEFASDNNAKGIKKFVDHDVSSLNRKGLWYIRPKGSKQVICDWRTPLMVAATYGSVDVLNLILSYSEVNVNLSCGRDRSTALHCAASGGSINVVEVIVLLLSSGADPKCVDASGNRPIDVIFVHPKIKSMGVKLEDLLKINTYNTSFNLPLPIETLGAVRAVSPIRSSSVENVSSPSLFTSSPVALKCNDGRLNSAAEKKEYPADPSLPDIKSSMYATDEFRMFSFKVRPCSRAYSHDWTDCPFVHPGENARRRDPRKYHYSCMPCPNFKKGPCRHGDKCEYAHGVFESWLHPAQYRTQLCKDGTSCNRRVCFFAHTIKELRPSHLSIGSGGNSVHCNSSPSNVTDMVTAISHWPGFPSLVSGSSLSPSSSGLSPSVNGVSQSISWPQPSVPSIHLPGSNLQSSRLSCSLGSRNRPCGDSNMIPEFDSVQQISNDLTCFSRSQMNFESIVRSKMQPPSNIDDVYTSHISSSPKFPDPATTSIFSLTHQSISLNQCRKQKQMPTPVNESILSPRSVDYPLLQASFELSSRRRMLLRNVEPSPVTSRFSAYALEDMQHQPLRSLVSRDLATNVIASPLMCSSNSWPKCGSPEEVDWSVNGDDLALFERSKLKKNAEEPDLSWIQTLVKEPPPEMIHYVLIAWLEKMQLDQITV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12538611 12540787 + Bpe002863.1 Bpe10g00548 109670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00548 693 ProSiteProfiles Zinc finger C3H1-type profile. 307 329 IPR000571 GO:0046872
Bpe10g00548 693 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Bpe10g00548 693 Gene3D - 304 365 - -
Bpe10g00548 693 SUPERFAMILY Ankyrin repeat 44 164 IPR036770 -
Bpe10g00548 693 SMART ANK_2a 119 151 IPR002110 GO:0005515
Bpe10g00548 693 SMART ANK_2a 37 67 IPR002110 GO:0005515
Bpe10g00548 693 SMART ANK_2a 84 114 IPR002110 GO:0005515
Bpe10g00548 693 SMART c3hfinal6 302 328 IPR000571 GO:0046872
Bpe10g00548 693 SMART c3hfinal6 337 360 IPR000571 GO:0046872
Bpe10g00548 693 Gene3D - 5 191 IPR036770 -
Bpe10g00548 693 PANTHER UNKEMPT FAMILY MEMBER 23 682 IPR045234 -
Bpe10g00548 693 ProSiteProfiles Ankyrin repeat region circular profile. 119 148 - -
Bpe10g00548 693 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 23 682 - -
Bpe10g00548 693 Pfam Ankyrin repeats (3 copies) 83 151 IPR002110 GO:0005515
Bpe10g00548 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 327 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe10g00548 Bpe11g00093 CCT
Bpe10g00548 Bpe11g00093 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00548 Bpe-Chr10:12538611 Bpe15g01239 Bpe-Chr15:20940315 3.11E-114 dispersed
Bpe10g00548 Bpe-Chr10:12538611 Bpe11g00093 Bpe-Chr11:651152 0 wgd
Bpe10g00548 Bpe-Chr10:12538611 Bpe03g00541 Bpe-Chr3:25640373 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21947 PF12796 Ank_2 7.60E-08 CL0465 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00548 - - tcc:18614626 746.503