Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00553 ATGGCAGATCCTTATTCCAATTTCTTCAATGGCTGGTTCAACTCTACGTCTGTAGCTCCTCGCTTTTCTTCCCTCACTTCTTACTACTCACAACCCTCTTTGAATCTTTCTTCTCCTTTTCCCAGCTCGCACAAGGACGACAACGACATGTTAATTACCAGTACTGATACTACTAATTCATCGTTTCAATCTCAGCCCTTATTTTCTTCATCGCCTCCTTCTATACAAGCTCTTCCTTTGATAAACCAATTAAGCCCAGAAAATTACGCGAACTCGAGCAACGGAACAATGAACGAGAAAGATGGGAGGAATTATGGCAATGAAGAAGAAGACGATGAATCTTTTTCTATAGCCCTAAGTATAGGCCTTCCTTGTTCTAATTTGGATTTGGAAACCAGAGAACTCATTTCGCCGCCATTTTCGTACTTGGGCGAGAAGGATGAAAGCCGTTTGGTTTCGGATTACCCATTGTACAGATTAAACAAGGGTCAATACTGGATTCCAACCCCTTCTCAGATTCTCATTGGTCCTACTCAATTTTCATGTCCACTTTGCTCTAAGGCTTTTAACAGATACAACAATCTCCAGATGCATATGTGGGGACATGGATCACAGTACAGAAAGGGGCCAGAGTCTCTGAAAGGAATCCAACCAACAGCCATGTTGAAGCTCCCTTGCTACTGCTGTGCATCAGGCTGCAAATACAACATCGACCACTCTCGATCCAGGCCACTCAAAGATTTCAGAACCCTTCAAACCCACTACAAGAGAAAGCATGGGATGAAATCCTTCACCTGCAGAAAATGCAATAAGCCTTTTGCTGTGAAAGGCGACTGGAGAACGCACGAGAAGAACTGTGGAAAATTTTGGTATTGCTTTTGTGGCTCCGATTTTAAGCACAAACGGTCGCTGAAAGATCACGTCAGGGCTTTCGGCCATGGCCATGGACCCGTCGGCCTTAATTTCTTCGAGGATGAGAATGATCCTTCGTCTGAAGTTGAACACGATGGTGATAATTCAACGTGA 1026 43.96 MADPYSNFFNGWFNSTSVAPRFSSLTSYYSQPSLNLSSPFPSSHKDDNDMLITSTDTTNSSFQSQPLFSSSPPSIQALPLINQLSPENYANSSNGTMNEKDGRNYGNEEEDDESFSIALSIGLPCSNLDLETRELISPPFSYLGEKDESRLVSDYPLYRLNKGQYWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGIQPTAMLKLPCYCCASGCKYNIDHSRSRPLKDFRTLQTHYKRKHGMKSFTCRKCNKPFAVKGDWRTHEKNCGKFWYCFCGSDFKHKRSLKDHVRAFGHGHGPVGLNFFEDENDPSSEVEHDGDNST 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12575854 12577893 + Bpe002867.1 Bpe10g00553 109675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00553 341 MobiDBLite consensus disorder prediction 88 109 - -
Bpe10g00553 341 MobiDBLite consensus disorder prediction 36 68 - -
Bpe10g00553 341 Pfam Zinc finger, C2H2 type 180 199 IPR013087 -
Bpe10g00553 341 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 336 - -
Bpe10g00553 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Bpe10g00553 341 Gene3D Classic Zinc Finger 179 202 - -
Bpe10g00553 341 SMART c2h2final6 180 202 IPR013087 -
Bpe10g00553 341 SMART c2h2final6 290 313 IPR013087 -
Bpe10g00553 341 SMART c2h2final6 264 284 IPR013087 -
Bpe10g00553 341 SUPERFAMILY beta-beta-alpha zinc fingers 180 284 IPR036236 -
Bpe10g00553 341 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Bpe10g00553 341 PANTHER ZINC FINGER PROTEIN WIP2 1 336 IPR043584 GO:0003700|GO:0010468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe06g00633 Bpe10g00553 CCT
Bpe06g00633 Bpe10g00553 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00206 Bpe-Chr8:1146296 Bpe10g00553 Bpe-Chr10:12575854 1.54E-100 dispersed
Bpe08g01298 Bpe-Chr8:14312392 Bpe10g00553 Bpe-Chr10:12575854 6.94E-26 dispersed
Bpe10g00553 Bpe-Chr10:12575854 Bpe13g01331 Bpe-Chr13:18557497 7.21E-95 dispersed
Bpe10g00553 Bpe-Chr10:12575854 Bpe06g00633 Bpe-Chr6:17106550 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21948 PF00096 zf-C2H2 0.0018 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00553 - - qsu:111986391 426.402