Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00572 ATGGAGCTTGGCCTGAGCTTGGGAGATGCAACGAAGACGTTCACTTTCGCTGAAAAGCCTCGACATCGAAGAGTTTCTGCAAAAGATTTAGGCTTTTGCATGGGTTTATCGATTGGATTGGCACCTGTGACTGGAGAGAAAGAAACTGGAGGAGAAGAAGAAGAAGAAAAAGAATATGAAAATGGCGAAGATAATCAATTATGTGGAGAAGAGGAGGATTCTCGTCCAGTCTCTATTGATGGACCAGTTCAGCTCGACCTGCTTCCTCACACTCCTGTACCTCGAATTCCTCCGAGCACTGTCCAAATCTTCCATTGGCACCCACGGGAAGACGGGAGTTCTGAAGCTGGTTCCTCAACCAGGGGGCTAGACGTGAATCGAATACCCTCAGCGGAGGCAGCCGACGGAGACGCATCGCCGCCGTACGATGCAGCGATTTCGTTACCGACGTACACCGGCGGAGGAGACGGCGCCGGAAATGAAATGGGACAGGTGGATAGAACATCTTCCAGAGCAAGCGATGACGATGAGAATGGCTCTAGCAGGAAAAAACTGAGACTTTCAAAAGAACAATCTGCTTTCTTAGAAGAAAGTTTCAAAGAACACAACACGTTAAACCCAAAGCAAAAGCTTGCCGTCGCGAAACAGCTCAATCTCCGACCTCGCCAGGTAGAAGTGTGGTTTCAAAATCGGAGAGCCAGGACGAAACTGAGGCAAACGGAGGTGGATTGCGAATACTTAAAGAAGTGCTGCGAGACACTGACGGTGGAAAACAGACGGCTGCAGAAAGAGTTGCAAGAGCTAAGAGCGTTGAAGAGCAACAACTCACTGTACATGCAATTACCAGCGACGACTCTAAATATGTGCCCCTCTTGCGAACGGGTAGCCACTTCTTCAACCGCCGCTGCCGTCTGCACCGCCGGAGCTTCAAAGACGAGCACCGAACCTACAATAAAGGCGTCATCTGGGCTATCTTTTAGCAAACCCAGGTCCTATCCCTTTGGTCCGCACCAATCCCCGGCTTCCTAA 1029 50.15 MELGLSLGDATKTFTFAEKPRHRRVSAKDLGFCMGLSIGLAPVTGEKETGGEEEEEKEYENGEDNQLCGEEEDSRPVSIDGPVQLDLLPHTPVPRIPPSTVQIFHWHPREDGSSEAGSSTRGLDVNRIPSAEAADGDASPPYDAAISLPTYTGGGDGAGNEMGQVDRTSSRASDDDENGSSRKKLRLSKEQSAFLEESFKEHNTLNPKQKLAVAKQLNLRPRQVEVWFQNRRARTKLRQTEVDCEYLKKCCETLTVENRRLQKELQELRALKSNNSLYMQLPATTLNMCPSCERVATSSTAAAVCTAGASKTSTEPTIKASSGLSFSKPRSYPFGPHQSPAS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12688150 12689403 - Bpe002885.1 Bpe10g00572 109694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00572 342 CDD homeodomain 182 239 IPR001356 GO:0003677
Bpe10g00572 342 Coils Coil 251 274 - -
Bpe10g00572 342 Pfam Homeobox associated leucine zipper 238 272 IPR003106 GO:0006355|GO:0043565
Bpe10g00572 342 MobiDBLite consensus disorder prediction 62 77 - -
Bpe10g00572 342 MobiDBLite consensus disorder prediction 309 342 - -
Bpe10g00572 342 SMART halz 238 281 IPR003106 GO:0006355|GO:0043565
Bpe10g00572 342 SMART HOX_1 180 242 IPR001356 GO:0003677
Bpe10g00572 342 MobiDBLite consensus disorder prediction 43 91 - -
Bpe10g00572 342 ProSiteProfiles 'Homeobox' domain profile. 178 238 IPR001356 GO:0003677
Bpe10g00572 342 MobiDBLite consensus disorder prediction 168 187 - -
Bpe10g00572 342 Pfam Homeodomain 182 236 IPR001356 GO:0003677
Bpe10g00572 342 SUPERFAMILY Homeodomain-like 171 239 IPR009057 -
Bpe10g00572 342 MobiDBLite consensus disorder prediction 131 187 - -
Bpe10g00572 342 PANTHER PROTEIN, PUTATIVE-RELATED 75 335 - -
Bpe10g00572 342 MobiDBLite consensus disorder prediction 309 328 - -
Bpe10g00572 342 ProSitePatterns 'Homeobox' domain signature. 213 236 IPR017970 GO:0000981|GO:0006355
Bpe10g00572 342 Gene3D - 186 236 - -
Bpe10g00572 342 PANTHER - 75 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01452 Bpe-Chr4:21149666 Bpe10g00572 Bpe-Chr10:12688150 9.81E-96 dispersed
Bpe05g00564 Bpe-Chr5:19771855 Bpe10g00572 Bpe-Chr10:12688150 1.48E-73 dispersed
Bpe10g00025 Bpe-Chr10:368378 Bpe10g00572 Bpe-Chr10:12688150 1.04E-62 dispersed
Bpe10g00572 Bpe-Chr10:12688150 Bpe15g00281 Bpe-Chr15:14286829 5.30E-64 dispersed
Bpe14g01007 Bpe-Chr14:7463407 Bpe10g00572 Bpe-Chr10:12688150 2.38E-46 dispersed
Bpe10g00572 Bpe-Chr10:12688150 Bpe11g00083 Bpe-Chr11:567014 9.86E-50 wgd
Bpe10g00572 Bpe-Chr10:12688150 Bpe06g00652 Bpe-Chr6:17223437 1.13E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21952 PF00046 Homeodomain 1.00E-14 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00572 K09338 - nnu:104603567 362.459