Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00629 ATGATTGTTGTCACACAGAGACAGAGTGAGGATGCATTATCAAGTTCATTTTATGATGAACGACTGGTTGAAATTCCGCATCATGATGGTAGACCATCAAATAGCCCACAAGCAGCTACATATTCAATTCCTTCAACCGCAAACCATCTGAACTTTAGAAACTCCCTTAGAAGAGGCGATCTTTATGGTCCACCCGAAAGAAATCCCTTTAATTCTGGGCTGTGGATTTCTATTGAGCTTGTTGTCACTGTGGGACAGATAATTGCGTCTATTATCATTTTATCTCTATCAAAAAATGAGAAACCACAGGCCCCATTGTTTGCGTGGGTTCTGGGTTATGCAACTGGTTGTGTGGCTACTCTCCCTGTTCTTTATTGGCGTTATTGTAATTGTCTCCGAGATGATGAGCTGCATTCCTCTCAATTGTATCTAGGCTCTTTCCAACGTAACTCTCCCGAACCTTCATCTTATACAGCTATTTCCATTGGTCAAATGTCAGATGATGAAATTGATCAAAGCACTGAAACCACTCCAAGAAACCCAGAAATAAGAACCTTATGCACGCAGCTTAATGCATTAATGGACCATTTTAAGATGGCATTGGATGGCTTCTTTGCTGTGTGGTTTGTTGTGGGTAATGTTTGGATCTTTGGAGGTCACTCTTCTCCTTCTGAAGCTCCTAATCTATACCGGCTGTCTTTAGTGTTCCTTACCTTCAGCTGTATTGGATATGCAATGCCATTTGTTATATGTGCCACAATCTGTTGTTGCATGCCTTGCATAATATCCATACTGGGTATTCGAGATGATCGATTGGAAATTACTGGGGCAACATCAGAATCTATCAATGCTCTTCCTACATATAAGTTCATTTTACAAACGAATAAGTGTGTCAATGATCATGAAATAAGCACGGTGCCATGTGAAGGTGGATTTTTGGCTGCAGGTACCAAAAAGGGTCGAGTAATATCAGGTGAAGATGCGGTCTGTTGTATTTGCTTAACCGAATATGCAGACAATGATGAACTGAGAGAACTCCCCTGCTTCCATGTCTTTCACATTGGGTGCATTGATAAATGGTTAAAGATGAATGCATTATGTCCTCTCTGTAAAAGCTACATCGGTCAGAGCAGTCGCGCATAG 1143 41.12 MIVVTQRQSEDALSSSFYDERLVEIPHHDGRPSNSPQAATYSIPSTANHLNFRNSLRRGDLYGPPERNPFNSGLWISIELVVTVGQIIASIIILSLSKNEKPQAPLFAWVLGYATGCVATLPVLYWRYCNCLRDDELHSSQLYLGSFQRNSPEPSSYTAISIGQMSDDEIDQSTETTPRNPEIRTLCTQLNALMDHFKMALDGFFAVWFVVGNVWIFGGHSSPSEAPNLYRLSLVFLTFSCIGYAMPFVICATICCCMPCIISILGIRDDRLEITGATSESINALPTYKFILQTNKCVNDHEISTVPCEGGFLAAGTKKGRVISGEDAVCCICLTEYADNDELRELPCFHVFHIGCIDKWLKMNALCPLCKSYIGQSSRA 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13045507 13047454 + Bpe002940.1 Bpe10g00629 109751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00629 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 377 IPR013083 -
Bpe10g00629 380 Pfam Ring finger domain 330 371 IPR001841 -
Bpe10g00629 380 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Bpe10g00629 380 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 14 376 - -
Bpe10g00629 380 SUPERFAMILY RING/U-box 324 376 - -
Bpe10g00629 380 CDD RING-H2_RNF111_like 329 371 - -
Bpe10g00629 380 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 14 376 - -
Bpe10g00629 380 SMART ring_2 330 370 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00629 Bpe-Chr10:13045507 Bpe14g00565 Bpe-Chr14:4815386 8.65E-126 dispersed
Bpe10g00629 Bpe-Chr10:13045507 Bpe02g01228 Bpe-Chr2:15913249 1.08E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00629 - - jre:109009152 481.87