Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00655 ATGACTAGAAAGAAGGTGAAGCTTTCGTACATATCAAATGATTCAGCAAGAAAAGCAACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTGAGTGAACTCACGACCCTTTGCGGGATCGATGCTTGTGCGATCATTTACAGCCCCTATGACTCTCAACCTGAGGTGTGGCCTTCTGCCGGGGGAGTCCAGCGCGTGGTGGCTCAGTTCAAGAAAATGCCAGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAGCTTTCTTCGCCAGCGGATCGCCAAAGCACAAGAGATGTTGAAGAAGCAAAGGAAAGAGAACCGAGAGAAGGAGATTCGCCAATTGATGTTTGACTGCCTAACCGGAACAAAGGACCTGAACAGCATGAGCATGGTGGAGCTGAACGAGATGGGGTGGTTGGTTGATAGTACACTCAAGGATGTAAACAAGAGGATCGAGTCGCTCCAGAAAGAGGCCGCCAGTCGTACGAACATCGCCCACCCTGTCAATCCAGCTGTGGGAGGAGGCGGCGGAGCGGTAGCAGAAGATGGTTTCGGGGAGAGAGGATGGGAGAAGGAGGAGCCATGGTTTATGGATATTGGCTTTGGTGGGGACGACATGATTCTGCCTCTTGCAGATCCTAATCTCAACTGTCTCTATCTTTGGTCCAACGCGTTCTTTCCCTGA 690 50.58 MTRKKVKLSYISNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSAGGVQRVVAQFKKMPEMEQSKKMVNQESFLRQRIAKAQEMLKKQRKENREKEIRQLMFDCLTGTKDLNSMSMVELNEMGWLVDSTLKDVNKRIESLQKEAASRTNIAHPVNPAVGGGGGAVAEDGFGERGWEKEEPWFMDIGFGGDDMILPLADPNLNCLYLWSNAFFP 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13185083 13185772 + Bpe002965.1 Bpe10g00655 109777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00655 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bpe10g00655 229 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Bpe10g00655 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 Coils Coil 146 166 - -
Bpe10g00655 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Bpe10g00655 229 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
Bpe10g00655 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bpe10g00655 229 Coils Coil 87 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01593 Bpe-Chr2:18858285 Bpe10g00655 Bpe-Chr10:13185083 7.17E-69 dispersed
Bpe04g00618 Bpe-Chr4:3954125 Bpe10g00655 Bpe-Chr10:13185083 2.53E-37 dispersed
Bpe10g00655 Bpe-Chr10:13185083 Bpe11g01646 Bpe-Chr11:12625769 9.79E-12 dispersed
Bpe10g00655 Bpe-Chr10:13185083 Bpe14g00319 Bpe-Chr14:3138320 5.04E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21959 PF00319 SRF-TF 1.50E-18 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00655 - - vvi:100254549 288.5