Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00655 ATGACTAGAAAGAAGGTGAAGCTTTCGTACATATCAAATGATTCAGCAAGAAAAGCAACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTGAGTGAACTCACGACCCTTTGCGGGATCGATGCTTGTGCGATCATTTACAGCCCCTATGACTCTCAACCTGAGGTGTGGCCTTCTGCCGGGGGAGTCCAGCGCGTGGTGGCTCAGTTCAAGAAAATGCCAGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAGCTTTCTTCGCCAGCGGATCGCCAAAGCACAAGAGATGTTGAAGAAGCAAAGGAAAGAGAACCGAGAGAAGGAGATTCGCCAATTGATGTTTGACTGCCTAACCGGAACAAAGGACCTGAACAGCATGAGCATGGTGGAGCTGAACGAGATGGGGTGGTTGGTTGATAGTACACTCAAGGATGTAAACAAGAGGATCGAGTCGCTCCAGAAAGAGGCCGCCAGTCGTACGAACATCGCCCACCCTGTCAATCCAGCTGTGGGAGGAGGCGGCGGAGCGGTAGCAGAAGATGGTTTCGGGGAGAGAGGATGGGAGAAGGAGGAGCCATGGTTTATGGATATTGGCTTTGGTGGGGACGACATGATTCTGCCTCTTGCAGATCCTAATCTCAACTGTCTCTATCTTTGGTCCAACGCGTTCTTTCCCTGA 690 50.58 MTRKKVKLSYISNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSAGGVQRVVAQFKKMPEMEQSKKMVNQESFLRQRIAKAQEMLKKQRKENREKEIRQLMFDCLTGTKDLNSMSMVELNEMGWLVDSTLKDVNKRIESLQKEAASRTNIAHPVNPAVGGGGGAVAEDGFGERGWEKEEPWFMDIGFGGDDMILPLADPNLNCLYLWSNAFFP 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13185083 13185772 + Bpe002965.1 Bpe10g00655 109777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00655 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bpe10g00655 229 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Bpe10g00655 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 Coils Coil 146 166 - -
Bpe10g00655 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Bpe10g00655 229 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
Bpe10g00655 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bpe10g00655 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bpe10g00655 229 Coils Coil 87 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00655 - - - vvi:100254549 288.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01593 Bpe-Chr2:18858285 Bpe10g00655 Bpe-Chr10:13185083 7.17E-69 dispersed
Bpe04g00618 Bpe-Chr4:3954125 Bpe10g00655 Bpe-Chr10:13185083 2.53E-37 dispersed
Bpe10g00655 Bpe-Chr10:13185083 Bpe11g01646 Bpe-Chr11:12625769 9.79E-12 dispersed
Bpe10g00655 Bpe-Chr10:13185083 Bpe14g00319 Bpe-Chr14:3138320 5.04E-74 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21959 PF00319 SRF-TF 1.50E-18 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00655 Bpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0