Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00678 ATGGAAAAGCTTCCAAAATCAACAAGTATCAACTTCCAACAGCAAACAGCTTCATCAGTATCTTCTTCCATTGAAGAACCAGATCAAGAAGCCATTGCACAAATGAAGGAGATGATTTATAGAGCAGCAGCTTTTAGGCCAGTGAACTTGGGTTTAGAGGCAGTGGAGAAGCCGAAGAGGAAGAACGTTAGAATTTCAACTGATCCACAAACTGTAGCAGCGAGACAAAGGAGGGAGAGAATAGGAGAGAGAATTAGGGTTTTGCAGAAATTGGTTCCTGGTGGGAGCAAGATGGACACTGCATCCATGCTAGAGGAGGCTGCAAATTACCTCAAATTCCTCAAATCACAGATCAAGGCTCTTGAAAATCTTGGGCAAGAGATTGACACTATGAATAAGTCTCCACCTTCAAGCATTGCTTTCTCGTTCAACCCATCTTTTCCCATGCAAACCCACTTTTCAATCCTAAACCCTAATCACATCCCCTCTTTTCAGAAATGA 501 42.51 MEKLPKSTSINFQQQTASSVSSSIEEPDQEAIAQMKEMIYRAAAFRPVNLGLEAVEKPKRKNVRISTDPQTVAARQRRERIGERIRVLQKLVPGGSKMDTASMLEEAANYLKFLKSQIKALENLGQEIDTMNKSPPSSIAFSFNPSFPMQTHFSILNPNHIPSFQK 166
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 13312033 13312533 - Bpe002989.1 Bpe10g00678 109800
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00678 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 129 IPR036638 GO:0046983
Bpe10g00678 166 Coils Coil 104 124 - -
Bpe10g00678 166 Pfam Helix-loop-helix DNA-binding domain 75 114 IPR011598 GO:0046983
Bpe10g00678 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Bpe10g00678 166 MobiDBLite consensus disorder prediction 1 27 - -
Bpe10g00678 166 Gene3D - 69 135 IPR036638 GO:0046983
Bpe10g00678 166 PANTHER TRANSCRIPTION FACTOR BHLH87 3 160 - -
Bpe10g00678 166 SMART finulus 71 120 IPR011598 GO:0046983
Bpe10g00678 166 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 3 160 IPR045843 GO:0003700|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00254 Bpe-Chr10:9555078 Bpe10g00678 Bpe-Chr10:13312033 4.01E-31 dispersed
Bpe10g00678 Bpe-Chr10:13312033 Bpe02g01776 Bpe-Chr2:20088959 5.03E-20 dispersed
Bpe10g00678 Bpe-Chr10:13312033 Bpe03g00644 Bpe-Chr3:26654708 3.06E-69 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21964 PF00010 HLH 2.40E-06 No_clan Bpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00678 - - qsu:112039421 249.21