Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00717 ATGTTTCATCCTCAAGGAGCTGTTAGACGAACTTGTCGACTCCTTGCTGTCACCAGTGATGATTTACTTGAACATAAATGGAAAAAGGATGATGCGGAGGAGCATTTAAGATATCCCTTTCCAGAGCTACACTCTTCAGGGCGTTTAGAGGTCCGGAGTTTAGCGAGCCCGAGCAGAGCAGAATTCAGCAAACTTGTTGAATCATATCAACCAAATTTAATTTACTTGAGAGGGGTTGTACTCGAGAATGATGAAATTGGATCTTTGTCATGGAAAGGTGTTGATTTGTCCACTGTTGAAGCAATACATGATCTCTTTGTCACTACATTCCCGATCACTGTTTATCTTGAACTCACAAATGGAGAGGAATTGGCAAAGACACTTCACTCAAAGGGTATCCCGTATGTGATATATTGGAAGAACACTTTTTCGCGCTACGCAGCTAGCCATTTCTGTAATGCATTTCTTTCCGTTTTGCAAAGCTCGTCTGCTCATACGTGGGACGTGTTTCAACTTGCTCACGCCTCCTTTAGGCTTTACTGCTCTCAAAATAATAATCTCCATCTTAGGAATGAACATGAAGTTAGTGATGATTTTTGCCCACAACTTCTCGGGGAGCCATTAAAAATTAATATTGAACCTTCAGAGTCGGATATGGCCAAAGATGAAGAAGAAGATTCTTTGGGAACTCTCCCTGCCGTAAATATATATGCTGATGATGTGAGCATGAAGTTTCTTGTGTGTGGAGAACTGTGCAAGTTGGATGCATACTTACTTGGAGCTTTAGAGGATGGACTTAACGCCCTTTTGAACATCGAAATTCGAGGTAGCAAATTGCATGGCAAGTTTAGTGCTCCTCCACCTTCTCTTCAGGCGGAAATATTTTCTCCCGGAGTTGTGACAATGCGATGTGATATATCGACCACTACTTATGCTCATATCGCACTTTTGTTATCGGGTAGTGCACAAACATGTTTTGACGATCAGCTTTTGGAAAATCACATAAAAAAAGAAATTATTGAAAACAGCCAACCAGTTCATGCTATTACTGACAGTGAGGAGAGCAAAGTTCCACCATCGGAGCCTCGAAAATCTGCGTCAGTTGCTTGTGGGGCAGCGGTATTCGAAGTTGGTATGAAGATCCCTAACTGGGCTTCTCAGATTTTGAGGCAGCTAGCACCGGATATTTCCTATCGTAGCTTAGTAGCACTGGGTATTGCCTGCATACAGGGAGTACCCATTGCTTCGTTCGAGAGAGATGATGCTGATCGACTTCTTTACTTCCATCCAAAGCATGGACAAGACAGGTTTGCTAGTAATTCGATTCTTTATACCTCTCCAAGTTGGTTGACGCCGCCTGCCCCAACCCGAAAGAGGTCTAAGCCAGGAATAAATGGTGGTTTTCTTAGTAGCCTTGCCCGTCCAAACTTGTCCTCTGCTAGGATTGATGGACAAAACAAGGAGATGGCACTGATGCATGGCTTCAGCACATCCTTACTGCCGCCTCGGCAAAGGTTGAAAGTCCCGGCAATGAGGCCCATTCCTCGCCTTCATCGCCATAAAATGACACTTTTATCTGGACCGGCTGAGGCAAATGGCCATGATAGAGGGCAAATTAAGCCTAAAATAACAGTTGTTACTCCTCCGAAGCACGTTTTCGTTAGATCAACTTCTGGACAACAGCAAAAATTATGTTCGAGCTCGTCTCAGTCTAAGCAAATTATGTCCCTCAATCCACTGCCCTTGAAGAAGCATGGTTGTGGCAGAAACCCAATACATGATTGCTCTGAGGAGGATTTTCTGAAGGATGTACTGCAGTTTATGGTTGAACGAGGACACACCCGCCTTGTTCCTCCCGGTGGGCTCAGTGAGTTTCCAGATGCTGTACTCAATGGAAAGCGTCTCGACCTTTACAACTTGTACAAGGAGGTGGTTTCCAGAGGCGGATTTCGTGTTGGCAATGGTATCAACTGGAAAGGACAGATCTTTTCAAAAATGAGAAATTACACGATGACCAATAAAATGACAGGGGCCGGGAATACGCTGAAAAGGCACTACGAAACATACCTTCTCGAATATGAACTGGCTCACGATGATGTTGACGGGGAATGCTGCTTATTGTGTCACAGTAATGCCGCCGGAGATTGGGTGAATTGCGGGATCTGTGGTGAGTGGGCTCACTTTGGCTGTGATCGACGGCAAGGACTCGGTGCATTTAAGGATTATGCAAAAACAGCGGGTCTGGACTACATATGTCCACACTGCAGCAATACGAGTTTCAAGAGGAGACCGCCAAATGTTCGAAATGGGTTTTCCCAAAGCCTACTTGCCTCGCAGCCGTCGGGCGACTGA 2352 44.98 MFHPQGAVRRTCRLLAVTSDDLLEHKWKKDDAEEHLRYPFPELHSSGRLEVRSLASPSRAEFSKLVESYQPNLIYLRGVVLENDEIGSLSWKGVDLSTVEAIHDLFVTTFPITVYLELTNGEELAKTLHSKGIPYVIYWKNTFSRYAASHFCNAFLSVLQSSSAHTWDVFQLAHASFRLYCSQNNNLHLRNEHEVSDDFCPQLLGEPLKINIEPSESDMAKDEEEDSLGTLPAVNIYADDVSMKFLVCGELCKLDAYLLGALEDGLNALLNIEIRGSKLHGKFSAPPPSLQAEIFSPGVVTMRCDISTTTYAHIALLLSGSAQTCFDDQLLENHIKKEIIENSQPVHAITDSEESKVPPSEPRKSASVACGAAVFEVGMKIPNWASQILRQLAPDISYRSLVALGIACIQGVPIASFERDDADRLLYFHPKHGQDRFASNSILYTSPSWLTPPAPTRKRSKPGINGGFLSSLARPNLSSARIDGQNKEMALMHGFSTSLLPPRQRLKVPAMRPIPRLHRHKMTLLSGPAEANGHDRGQIKPKITVVTPPKHVFVRSTSGQQQKLCSSSSQSKQIMSLNPLPLKKHGCGRNPIHDCSEEDFLKDVLQFMVERGHTRLVPPGGLSEFPDAVLNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNKMTGAGNTLKRHYETYLLEYELAHDDVDGECCLLCHSNAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTAGLDYICPHCSNTSFKRRPPNVRNGFSQSLLASQPSGD 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13562254 13566861 - Bpe003028.1 Bpe10g00717 109839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00717 783 Gene3D - 591 697 IPR036431 GO:0003677
Bpe10g00717 783 CDD PHD_ARID4_like 704 755 - -
Bpe10g00717 783 SUPERFAMILY FYVE/PHD zinc finger 694 763 IPR011011 -
Bpe10g00717 783 SMART ARID_2 591 694 - -
Bpe10g00717 783 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Bpe10g00717 783 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Bpe10g00717 783 SMART bright_3 595 699 IPR001606 GO:0003677
Bpe10g00717 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 761 IPR013083 -
Bpe10g00717 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 771 IPR042293 -
Bpe10g00717 783 CDD ARID 596 694 - -
Bpe10g00717 783 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00717 - - - jre:109004980 1091.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00693 Bpe10g00717 CCT
Bpe03g00693 Bpe10g00717 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00717 Bpe-Chr10:13562254 Bpe03g00693 Bpe-Chr3:27034219 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g01140 CCT 27 384 ARID Transcription Factor Family AT1G04880 57.9 4.0e-102 368.6
Bpe04g01069 CCT 30 382 ARID Transcription Factor Family AT1G04880 53.4 1.8e-86 316.6
Bpe02g00331 . 16 337 ARID Transcription Factor Family AT1G76110 60.6 8.0e-103 370.5
Bpe03g00693 CCT,ECH 2 779 ARID Transcription Factor Family AT3G43240 56.4 4.2e-253 870.9
Bpe10g00717 CCT,ECH 1 770 ARID Transcription Factor Family AT3G43240 56.0 6.4e-246 847.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21970 PF01388 ARID 1.10E-15 CL0123 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00717 Bpe_Chr10 FPKM 217.692886 244.302902 30.040022 32.133301 11.456395 12.568686 11.082424 20.628105 18.980545 17.369192