Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00763 ATGGAGTGGAGCATGAAACCCCCTTATGATTGGAACCGTGAGCTGTCCATATTCAATTCTGAGGAAACAAAAAGTTTTAGTCATTTGGAACCCATGGAATGGTACAATCAAAGAGATCCAGAATTTGGTTTTGGATCTTTGAACTTGGCTGGAGATGGCAGGGGTTATGACAGTCCTGTGTCTGATTTGGTGAATTCCTCCTCGTCAAAAAGCATAAAATCAGCTTCCATATCCTTAATCGAGGAATGTAAAAATTCCAAAATCACAACTGATGATTTTGAAGCTTTTCTAGAAGATTGTGGTGAAAGAAAAGAAATGGTTGGAAATGGTTCAGCTGGAACTTACTCTGCCATTGAGACTTCCGCTGGCTCTAGTGAACAGCTTTTCCTAAGTTTGAAGCTAGGTAAGGGGATGTATTATGAAGATTCATGTTCTGAAAAAGCTGTGGCTACTTTATCTATGATGCCACCCGCACGGCAAAACAGAGCAAAGAGATGCAAATCTACCCATAAAAGTACATTAACCTCACGCTGCCAAGTTGAAGGTTGTAATATTGACCTTTCATCTGCCAAAGAGTACCATCGCAAGCACAGAGTTTGTGAAAGTCATTCTAGATCACCCAATGTCATCATAGCTGGTCTTGCACGTCGGTTTTGCCAGCAGTGTAGCAGGTTTCATAGTTTGTCTGACTTCGACGAGAAAAAGCGAAGCTGTCGTAAGCGTCTTTCTGATCACAATGCCAGGCGTCGTAAGTCACTGCCAAAAGTAACAAATTTTAATTCAGGAAGCACGTCATCAATCTATGATCTGAGGCAACAAATGGACCTTTCTTTGGATATGGTTCCACCCACTTGTCAGAGACCTGCAGCAAATTTAGCATGGGAAGCTCTATGCAGCTCCAAATACGCACAAACATGCCAACGGAAACCTGAAAAAGCAATCTGCAAAAATGGGCAGCTAAATCCTCTGGGGATTGAGAAGCCGTTTACGATCACTATGCCTCATCGTACCTCAAGTAAGCTCTTTGCAACCAGAGGAATTGCAGCTGACGATCTTAACCCAGGTTTCAATGAATATAGGGTATCTTCAAGCATGGACGTTGCTCGGAATTACAGCAGTGCTCTCTCTCTTCTGTCAACTGATGCTTGGGGCTTGGGTGAATCGAAAAGTATTTTGCCTCAGAACCGCAAGCAACCAAACCAAATTAAAATGCCCTCAACTGGGATACAAACAACAATCCAGAGCACATCTCTTCTTTCAGACCAGTGGCGTGATGAGCACAATTCGTCTGCCTCTGGATTTCATATATTCCAGCAACAAGGTGATGGAGGTATAGATTTTCAGCTCTTTAAATCACCACTGGAGAATGGACTATACCCAGATCTCTTGGGTTGA 1395 42.87 MEWSMKPPYDWNRELSIFNSEETKSFSHLEPMEWYNQRDPEFGFGSLNLAGDGRGYDSPVSDLVNSSSSKSIKSASISLIEECKNSKITTDDFEAFLEDCGERKEMVGNGSAGTYSAIETSAGSSEQLFLSLKLGKGMYYEDSCSEKAVATLSMMPPARQNRAKRCKSTHKSTLTSRCQVEGCNIDLSSAKEYHRKHRVCESHSRSPNVIIAGLARRFCQQCSRFHSLSDFDEKKRSCRKRLSDHNARRRKSLPKVTNFNSGSTSSIYDLRQQMDLSLDMVPPTCQRPAANLAWEALCSSKYAQTCQRKPEKAICKNGQLNPLGIEKPFTITMPHRTSSKLFATRGIAADDLNPGFNEYRVSSSMDVARNYSSALSLLSTDAWGLGESKSILPQNRKQPNQIKMPSTGIQTTIQSTSLLSDQWRDEHNSSASGFHIFQQQGDGGIDFQLFKSPLENGLYPDLLG 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13880213 13882679 + Bpe003069.1 Bpe10g00763 109885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00763 464 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 459 IPR044817 GO:0003677
Bpe10g00763 464 SUPERFAMILY SBT domain 177 256 IPR036893 GO:0003677|GO:0005634
Bpe10g00763 464 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 21 459 - -
Bpe10g00763 464 Pfam SBP domain 178 251 IPR004333 GO:0003677
Bpe10g00763 464 ProSiteProfiles Zinc finger SBP-type profile. 175 252 IPR004333 GO:0003677
Bpe10g00763 464 Gene3D - 174 239 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00763 - - - qsu:112038163 330.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00763 Bpe-Chr10:13880213 Bpe07g00747 Bpe-Chr7:14002065 1.16E-30 dispersed
Bpe10g00763 Bpe-Chr10:13880213 Bpe02g00012 Bpe-Chr2:130323 3.42E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1258 . . . . . Bpe10g00763 . Bma15g00259 Cmo04g01939 . . Cma18g00688 . Car18g00638 . Cpe09g00597 Cpe01g01623 . . . . . . . . . . . . . . . . . . . . . . Blo06g00809 . . . . . . . . . . Cma04g01843 . Car04g01848 . . Cpe03g01229 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014120 1 0 0 1 1 0 2 0 0 0 0 0 2 0 0 2 0 2 2 0 0 1 1 1 1 0 1 2 1 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21973 PF03110 SBP 4.60E-31 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00763 Bpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0