Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00778 ATGATGTTGCATGCTCAGAATCTCCTGCAGGAAACTCGAATTTCACTTGTTCATTATGTAAACTGGGTGTCCTTTCGAAGTTTCTCTCTCGCATTTTCTCCGGCAAGTTTTTCTTCCCCTCCCACGTGTAAAGATGGAGTTTTTGAGCAAGCACTACAATCTGAAAGCGTAGAAGGATTGTCAGACCTTGACATTATTGCTGCTAAAGCTTGCAAAGGAAGCGATGAAGACGAAGTTCTTCGATCTCTCTCAAGTGAGGAAGCATGTAACTCCATTAATCTTTCAAATTACCTAGTCGAGAAACTGCTCCATCAATTTAAGGATGATTGGAAGTCTGCATTGGGTGTCTTCAAATGGGCAGAGCACCGCTCAGGCTATAAGCTGCCCCCAGAAACTTATGATCAAGTTGTCGATACACTAGGTAAAACAAAGCAAATGAAGAAGATGATGAACTTTCTAGAAGAGATGAATCAAATTCATCTTGTAACACCTAAAACCATAGCAAGAGTTATGAGAAGATATGCAGGTGCAGGAGAATGGGAAAACGCCGTGAGGATATTCGATGACTTAGAAACTTTCGGGTTGGAGAAGAACACTGAATCCATGAACTTGTTGCTTGATACCCTTTGCAAAGAGAAGAAGGTAGATCAAGCCCGTGAAGTATTTTTAAAGCTGAAAACTCACATTTCTCCTAATGCTTTCACGTTCAACATTTTCATCCATGGTTGGTGCAAGGCTAACCGTGTTGATGAGGCGTATTGGACTATGCAAGAGATGAAGGGATACGGCTATCGTCCTTGTGTCATTAGTTATTCAACCATTATTCTGTTCTATTGCCGCCAATTCAATTTCTCCAAAGTCTATGAGCTGCTTGATGAAATGGAAGCAAATAAATGTCCGCCAAATGTCATCTCCTACACAACTATTATGTGCTCGTTGGCTAAATCGAAGGAATTTGAAGAGGCTTTACAAATTTCAGAGAGAATGAAAGCAGTTGGATGTGAACCAGATACACTATTTTACAACTCATTGATCCATACGCTTGGTCAAGCTGGTCAAATACAAAAGGCAACTCAAGTATTTGAATTGGAAATGTCAGGAAAGGGTGTTAAGCCAAATACATCAACTTACAACACTTTGATTGCTATATTCTGCCACAGCAATCAAGCACAAAAGGCCTTGAATCTATTGAGGGAGATGGAGGATTTAAATCTCTGTAAGCCTGATTTGCAGACATTCTACCCATTACTCAAATCCTGCTTCAAAACAAAGAGGGTCAATGGTGATCTGAGCAAGTTATTGGACTGTATGATCAATAAACATCATCTAAGCTTCGATATCTGA 1344 40.1 MMLHAQNLLQETRISLVHYVNWVSFRSFSLAFSPASFSSPPTCKDGVFEQALQSESVEGLSDLDIIAAKACKGSDEDEVLRSLSSEEACNSINLSNYLVEKLLHQFKDDWKSALGVFKWAEHRSGYKLPPETYDQVVDTLGKTKQMKKMMNFLEEMNQIHLVTPKTIARVMRRYAGAGEWENAVRIFDDLETFGLEKNTESMNLLLDTLCKEKKVDQAREVFLKLKTHISPNAFTFNIFIHGWCKANRVDEAYWTMQEMKGYGYRPCVISYSTIILFYCRQFNFSKVYELLDEMEANKCPPNVISYTTIMCSLAKSKEFEEALQISERMKAVGCEPDTLFYNSLIHTLGQAGQIQKATQVFELEMSGKGVKPNTSTYNTLIAIFCHSNQAQKALNLLREMEDLNLCKPDLQTFYPLLKSCFKTKRVNGDLSKLLDCMINKHHLSFDI 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13964749 13966163 + Bpe003084.2 Bpe10g00778 109900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00778 447 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Bpe10g00778 447 Pfam PPR repeat family 372 421 IPR002885 -
Bpe10g00778 447 Pfam PPR repeat 229 260 IPR002885 -
Bpe10g00778 447 PANTHER OS02G0601600 PROTEIN 40 447 - -
Bpe10g00778 447 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Bpe10g00778 447 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 40 447 - -
Bpe10g00778 447 Pfam Pentatricopeptide repeat domain 290 350 IPR002885 -
Bpe10g00778 447 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Bpe10g00778 447 TIGRFAM PPR: pentatricopeptide repeat domain 304 338 IPR002885 -
Bpe10g00778 447 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Bpe10g00778 447 TIGRFAM PPR: pentatricopeptide repeat domain 269 303 IPR002885 -
Bpe10g00778 447 TIGRFAM PPR: pentatricopeptide repeat domain 234 266 IPR002885 -
Bpe10g00778 447 Gene3D Tetratricopeptide repeat domain 227 295 IPR011990 GO:0005515
Bpe10g00778 447 Gene3D Tetratricopeptide repeat domain 56 226 IPR011990 GO:0005515
Bpe10g00778 447 Gene3D Tetratricopeptide repeat domain 363 439 IPR011990 GO:0005515
Bpe10g00778 447 Gene3D Tetratricopeptide repeat domain 296 362 IPR011990 GO:0005515
Bpe10g00778 447 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Bpe10g00778 447 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 372 IPR002885 -
Bpe10g00778 447 Pfam PPR repeat 201 226 IPR002885 -
Bpe10g00778 447 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00778 - - - qsu:111985482 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00778 Bpe-Chr10:13964749 Bpe14g00395 Bpe-Chr14:3696294 1.43E-20 dispersed
Bpe10g00778 Bpe-Chr10:13964749 Bpe14g00495 Bpe-Chr14:4411505 5.62E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00778 Bpe_Chr10 FPKM 0.360707 0.141263 0.250246 0.151525 0.216924 0.202715 0.023513 0.800176 0.7421 1.109062