Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00780 ATGGCGACCCCCACCACTTCTTCCTCTTATCCAATTTTCACCAATTACCCTCTCCTTTCTGCTCTCGTTGCCTTCGTGATTGCTCAGCTCACCAAGTTCTTCTCCGCATGGTACAAGGAAAGACGGTGGGATCTGAAACAGCTTTTTGGATCTGGTGGGATGCCATCATCGCATTCTTCCACTGTTACTGCTCTTGCGGTAGCCATTGGGTTTCAAGATGGCTTTGGAGGACCAATTTTTGCTATTGCCTTGATACTAGCCTGTGTCGTAATGTATGATGCCACTGGTGTAAGATTACATGCCGGACGCCAAGCAGAGGTTTTGAATCAGATTGTATATGAACTTCCTGCTGAGCATCCTCTTGCTGAGAGCAGACCTTTGCGTGAACTTCTTGGCCACACCCCTCCCCAGGTTGTAGCTGGAGGATGCCTTGGAATTGTCACAGCAACTCTTGGCTATCTGATTATCTTGATAAGTAGACAAAGACTGTGA 492 47.56 MATPTTSSSYPIFTNYPLLSALVAFVIAQLTKFFSAWYKERRWDLKQLFGSGGMPSSHSSTVTALAVAIGFQDGFGGPIFAIALILACVVMYDATGVRLHAGRQAEVLNQIVYELPAEHPLAESRPLRELLGHTPPQVVAGGCLGIVTATLGYLIILISRQRL 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13980490 13982501 + Bpe003086.1 Bpe10g00780 109902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00780 163 PANTHER ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 3 159 - -
Bpe10g00780 163 Pfam Divergent PAP2 family 14 147 IPR003832 -
Bpe10g00780 163 PANTHER ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 3 159 IPR003832 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00780 K09775 K09775; uncharacterized protein - pvy:116126451 263.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00215 Bpe-Chr3:2654692 Bpe10g00780 Bpe-Chr10:13980490 5.43E-20 dispersed
Bpe10g00780 Bpe-Chr10:13980490 Bpe14g00748 Bpe-Chr14:5756404 2.63E-58 dispersed
Bpe10g00780 Bpe-Chr10:13980490 Bpe07g00624 Bpe-Chr7:12949043 1.87E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1155 . . . . . Bpe10g00780 . . . . . . . . . Cpe09g00573 . Bhi07g01878 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000740 5 3 3 4 4 2 3 2 3 2 2 2 2 2 2 3 2 7 5 3 2 3 3 2 2 2 2 9 4 3 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00780 Bpe_Chr10 FPKM 17.966585 20.208406 23.658024 22.612507 12.956105 16.349216 13.06828 23.675007 23.611954 24.212177