Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00785 ATGTGCCAGGCGCTTTCTGCAATATATGGCAAAGTGATGTCAATTTTTCCTTCCTTGGAAGCAGCACGGCCAAGAAGCAAATCTGGGATTCGTGCATTATGTTCCTTGCATGTAGCATTAGAAAAGGCAAAAAATATTCTTCAACACTGCTCGGAGTCCAGTAAACTTTACTTGGCCATAACTGGGGATTCTGTACTCTCAAAATTTGATAAGGCAAGATGCGCGCTTGAAGATAGTCTGAGATGCGTTGAAGATATTGTGCCACAATCAATTGGCTATCTGCTGTTTCAGATTTATGTGGTAGAGTATAATGAGACGTATTATCCTCAAAATATATCTGATTTTTTTTTTCTTTTGCAGATTCAAGGGATAGTCAGTGAACTTGAGGGCACTGTGTTTTCTCTTGATCCTTTTGAGAAACAAATTGGTAATGATATTATCCCTCTTCTCCAGCAGGGGAGGAAGTTCAGCAATTCCAAAAACAATAATGAGCTAGAGTTATTTCACCAAGCTGCCATTAAACTTGGAATAACCTCCTCTAGAGCAGCCCTTGCAGAGAGAAGAGCTCTTAAGAAACTTCTAGATAGGGCTCATGCTGAAGAAGATAAGCGGAAGGAATCTATCGTGGCTTATCTATTACATCTCATGAGGAAATACTCCAAATCTTTTAGATGTGAATTGTCAGATGACAATGATTCCCAGGGCTCTGCACCTTGTTCTCCCACTGTTCAGGGTTCGCTTGATGACATTGATTCTGGACGGGATGGAAATAGAAATTACTTCGAAAGACAGATTTCAAAATGTAGTTCTTCTAATTTGAAGTCAAGTAATAAGGAATCACAGCAGATGCTTGTCCCACCAGAGGAATTGAGGTGTCCAATATCTTTGCAGCTTATGTTTGATCCTGTTATCGTTGCATCTGGTCAAACATATGAAAGGTTCTGCATTGAAAAATGGTTTAATGATGGACGTAATACCTGCCCAAAAACACAACAGAAGCTCTCTCATCTTTCATTGACACCCAATTACTGTGTCAAGGGTGTTATTGCTACTTGGTGCGAAGAGAATGGACTCTCTATTCCTGATGGCCCTCCAGAGTCTATTGACCTCAGCTATTGGAAACTCATGCCTGCATCCGAGCCTTCAAACGCAAGTTTTACTGATTATTCCGAGACAAAAAAAGCGAAGGTAGTTCCATCGGAAAGTTGTGGAATTGTGGGGGAGGCTGACAGAAGTGAGGCAGATAATATGTCTGTGCAGGAGGAAACTTCTGAACCTAACGTGTTTGGTAGCTATAGGAATTTGTTGGTAGCCTTGAGTGGAGGAGACTGGATGAAAAAGTGCAAGGCAGTGGAGAAGATAAGGATCTTGCTGAAGGAGGATGTAGATGCTAGGGACTTTATGGGAGCTAGTGGCTTTGTGGAGGCACTTTTGGAATTTCTAAACTTAGCTTTGCATGAAAGGAATCTAAGCGCTCAGGAAAGTGGATCGATGGCTCTCTTCAACCTTGCCGTGAACAATAATAGAAACAAAGAGATGATGTTAGAGGCGGGAGTAATTATGTTGTTGGAGAAAATGATACTGAACTCAAACTCACATGGATATGCAGCTGCCCTTTATCTAAATCTCTCCTGTCTTGAAGATGCAAAGTCTATCATTGGCTCAAGTAGAGCCGTCTCATTCATGACTCATCTACTCACAGGAACAGCTTCACCTCAATGGAAGTTCGATGCATTACATTCACTTTATAATCTCTCCACATTGCCGTCCAATATTCCATACCTTCTCTGTGCCGGCATTGTGAGTAGCCTTCAAGAACTTTTGGCAGGTTCTGATGACCACATTTGGAACGAAAGATCTACTGCCATCTTGATAAACTTAGCTTCGGATCAATCAGGGAGAGATGAGATGATATCATTTCCTGGCCTCATTAGTTCACTGGCAACTATATTGGACACTGGTGAACCTGTAGAGCAAGAGCAAGTTATTGAATGCCTCCTCCTTTTGTGCAATGCAGATGAAAAATGCAGTGAAATGGTGTTAAGGGAAGGAGTTATTCCGGGATTGGTATCAATCTCCGTGAATGGGACAACGAGCGGCATAGAAAACGCGCAGAAACTTCTACTATTATTTCGGGAGAGGAGGCAACAAGACCAACCACCCATCTGTTACATGAATCAGGACGAAGAAAGCAGTGGGATGGCCATGCCTGCTCCAGAATCTAATCCATTTTGCAAATCAATTTCAAGAAGAAAATCAGGAAAAGCTCTTGGATTTCTATGGAAAAGAAGGAGCTATTCAGTCTACCAATGTTGA 2316 41.8 MCQALSAIYGKVMSIFPSLEAARPRSKSGIRALCSLHVALEKAKNILQHCSESSKLYLAITGDSVLSKFDKARCALEDSLRCVEDIVPQSIGYLLFQIYVVEYNETYYPQNISDFFFLLQIQGIVSELEGTVFSLDPFEKQIGNDIIPLLQQGRKFSNSKNNNELELFHQAAIKLGITSSRAALAERRALKKLLDRAHAEEDKRKESIVAYLLHLMRKYSKSFRCELSDDNDSQGSAPCSPTVQGSLDDIDSGRDGNRNYFERQISKCSSSNLKSSNKESQQMLVPPEELRCPISLQLMFDPVIVASGQTYERFCIEKWFNDGRNTCPKTQQKLSHLSLTPNYCVKGVIATWCEENGLSIPDGPPESIDLSYWKLMPASEPSNASFTDYSETKKAKVVPSESCGIVGEADRSEADNMSVQEETSEPNVFGSYRNLLVALSGGDWMKKCKAVEKIRILLKEDVDARDFMGASGFVEALLEFLNLALHERNLSAQESGSMALFNLAVNNNRNKEMMLEAGVIMLLEKMILNSNSHGYAAALYLNLSCLEDAKSIIGSSRAVSFMTHLLTGTASPQWKFDALHSLYNLSTLPSNIPYLLCAGIVSSLQELLAGSDDHIWNERSTAILINLASDQSGRDEMISFPGLISSLATILDTGEPVEQEQVIECLLLLCNADEKCSEMVLREGVIPGLVSISVNGTTSGIENAQKLLLLFRERRQQDQPPICYMNQDEESSGMAMPAPESNPFCKSISRRKSGKALGFLWKRRSYSVYQC 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14013626 14016585 - Bpe003091.1 Bpe10g00785 109907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00785 771 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 119 733 - -
Bpe10g00785 771 Gene3D - 431 709 IPR011989 -
Bpe10g00785 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Bpe10g00785 771 CDD RING-Ubox_PUB 290 332 IPR045210 -
Bpe10g00785 771 SUPERFAMILY RING/U-box 275 362 - -
Bpe10g00785 771 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Bpe10g00785 771 PANTHER U BOX DOMAIN-CONTAINING 119 733 - -
Bpe10g00785 771 MobiDBLite consensus disorder prediction 230 253 - -
Bpe10g00785 771 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Bpe10g00785 771 PANTHER U BOX DOMAIN-CONTAINING 1 104 - -
Bpe10g00785 771 Pfam U-box domain 287 356 IPR003613 GO:0004842|GO:0016567
Bpe10g00785 771 MobiDBLite consensus disorder prediction 230 247 - -
Bpe10g00785 771 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 1 104 - -
Bpe10g00785 771 SUPERFAMILY ARM repeat 435 693 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00785 - - - qsu:112018265 966.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00768 Bpe-Chr8:9485062 Bpe10g00785 Bpe-Chr10:14013626 1.84E-17 dispersed
Bpe10g00785 Bpe-Chr10:14013626 Bpe08g01367 Bpe-Chr8:14743875 1.62E-50 dispersed
Bpe10g00785 Bpe-Chr10:14013626 Bpe13g01504 Bpe-Chr13:20431440 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1184 Blo01g00365 Blo16g01194 . . . Bpe10g00785 . Bma15g00238 Cmo04g01920 Cmo18g00698 . Cma18g00710 . Car18g00655 Sed06g1738 Cpe09g00579 Cpe01g01608 Bhi07g01900 Tan04g0075 Cmetu10g0234 Lac13g0067 Hepe10g0096 . . . . . . . . . Cone13ag1136 Cone19ag1117 Cone8ag0740 . Lsi04g00666 . . Cme10g00643 Blo06g00829 . . . . . Bma01g00018 Bma06g00574 . . . Cma04g01823 . Car04g01836 . . . . . . . . . . Cla11g01354 Cam11g1412 Cec11g1438 Cco11g1436 Clacu11g1569 Cmu11g1389 Cre11g1810 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00159 . 1 1046 U-box Gene Family AT5G15400 73.3 0.0e+00 1511.9
Bpe06g00419 . 1 781 U-box Gene Family AT3G54790 52.5 2.2e-129 459.9
Bpe06g00004 BCT 195 823 U-box Gene Family AT2G23140 61.5 1.6e-104 377.1
Bpe15g00315 BCT 192 739 U-box Gene Family AT2G23140 52.3 3.0e-66 250.0
Bpe13g01504 . 1 756 U-box Gene Family AT1G24330 58.0 1.5e-237 819.3
Bpe10g00785 . 1 769 U-box Gene Family AT1G24330 54.5 8.7e-214 740.3
Bpe13g01504 . 1 758 U-box Gene Family AT1G67530 57.1 1.2e-231 799.7
Bpe10g00785 . 1 768 U-box Gene Family AT1G67530 54.1 1.8e-206 716.1
Bpe01g00378 . 1 365 U-box Gene Family AT4G21350 59.5 3.7e-117 418.3
Bpe02g01924 . 1 360 U-box Gene Family AT4G21350 61.3 5.9e-115 411.0
Bpe09g00300 . 134 457 U-box Gene Family AT3G07360 52.6 1.6e-84 309.7
Bpe06g00548 . 134 457 U-box Gene Family AT3G07360 61.2 5.2e-83 304.7
Bpe10g00477 . 134 457 U-box Gene Family AT3G07360 54.9 5.5e-77 284.6
Bpe11g01609 CCT 240 464 U-box Gene Family AT1G71020 55.8 5.7e-62 235.3
Bpe11g00764 CCT 254 421 U-box Gene Family AT1G71020 56.6 7.5e-46 181.8
Bpe08g01367 CCT 227 419 U-box Gene Family AT1G71020 50.5 8.3e-45 178.3
Bpe11g01609 CCT 1 668 U-box Gene Family AT1G23030 54.4 4.8e-106 382.1
Bpe11g00764 CCT 89 632 U-box Gene Family AT2G28830 58.3 8.1e-103 371.3
Bpe08g01367 CCT 89 629 U-box Gene Family AT2G28830 57.2 7.1e-99 358.2
Bpe11g00764 CCT 1 630 U-box Gene Family AT3G46510 68.1 4.9e-157 551.6
Bpe08g01367 CCT 1 629 U-box Gene Family AT3G46510 64.2 2.0e-142 503.1
Bpe11g00764 CCT 8 621 U-box Gene Family AT3G54850 54.5 4.6e-104 375.6
Bpe02g01755 . 34 643 U-box Gene Family AT5G42340 66.1 1.9e-140 496.5
Bpe11g01122 . 1 714 U-box Gene Family AT1G29340 64.4 2.6e-228 788.5
Bpe04g01488 . 1 393 U-box Gene Family AT3G52450 56.7 6.0e-127 451.1
Bpe03g01192 . 1 393 U-box Gene Family AT3G52450 53.4 1.6e-119 426.4
Bpe04g01488 . 1 392 U-box Gene Family AT2G35930 55.8 5.0e-123 438.0
Bpe03g01192 . 1 392 U-box Gene Family AT2G35930 53.5 3.3e-119 425.2
Bpe06g00274 . 1 396 U-box Gene Family AT5G64660 50.6 1.1e-104 377.1
Bpe15g00290 . 1 448 U-box Gene Family AT3G49810 71.7 1.1e-179 626.3
Bpe13g00136 . 1 450 U-box Gene Family AT3G49810 70.1 1.9e-176 615.5
Bpe05g00017 . 1 450 U-box Gene Family AT3G49810 61.1 4.0e-150 528.1
Bpe15g00290 . 1 448 U-box Gene Family AT5G65920 67.8 3.5e-167 584.7
Bpe13g00136 . 1 450 U-box Gene Family AT5G65920 66.5 3.1e-163 571.6
Bpe05g00017 . 1 450 U-box Gene Family AT5G65920 61.6 1.5e-149 526.2
Bpe13g00949 . 30 876 U-box Gene Family AT2G45910 52.8 1.3e-234 809.7
Bpe02g01207 . 466 748 U-box Gene Family AT2G45910 50.2 4.6e-75 279.6
Bpe13g00261 . 28 503 U-box Gene Family AT5G40140 50.3 1.6e-60 230.7
Bpe13g01362 . 310 907 U-box Gene Family AT1G68940 54.2 5.5e-174 608.6
Bpe02g01758 CCT 4 813 U-box Gene Family AT1G76390 63.3 2.2e-276 948.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G76390 60.4 1.9e-267 918.7
Bpe02g01758 CCT 7 813 U-box Gene Family AT1G20780 64.1 1.7e-284 975.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G20780 60.2 1.3e-268 922.5
Bpe13g01504 . 1 758 U-box Gene Family AT1G27910 59.5 4.1e-248 854.4
Bpe10g00785 . 1 771 U-box Gene Family AT1G27910 57.5 1.8e-235 812.4
Bpe10g00007 . 1 598 U-box Gene Family AT5G67530 75.0 1.8e-262 901.7
Bpe13g00911 . 16 164 U-box Gene Family AT5G67530 52.9 1.1e-43 174.9
Bpe13g00538 CCT 1 523 U-box Gene Family AT1G04510 73.3 3.7e-224 774.2
Bpe14g01276 CCT 2 521 U-box Gene Family AT1G04510 72.4 4.5e-222 767.3
Bpe13g00538 CCT 1 487 U-box Gene Family AT2G33340 73.1 9.7e-211 729.6
Bpe14g01276 CCT 2 485 U-box Gene Family AT2G33340 72.7 4.5e-208 720.7
Bpe03g00897 . 10 279 U-box Gene Family AT3G07370 66.3 9.2e-105 376.7
Bpe09g00301 . 7 277 U-box Gene Family AT3G07370 59.8 2.3e-92 335.5
Bpe14g00159 . 1 1046 U-box Gene Family AT5G15400 73.3 0.0e+00 1511.9
Bpe06g00419 . 1 781 U-box Gene Family AT3G54790 52.5 2.2e-129 459.9
Bpe06g00004 BCT 195 823 U-box Gene Family AT2G23140 61.5 1.6e-104 377.1
Bpe15g00315 BCT 192 739 U-box Gene Family AT2G23140 52.3 3.0e-66 250.0
Bpe13g01504 . 1 756 U-box Gene Family AT1G24330 58.0 1.5e-237 819.3
Bpe10g00785 . 1 769 U-box Gene Family AT1G24330 54.5 8.7e-214 740.3
Bpe13g01504 . 1 758 U-box Gene Family AT1G67530 57.1 1.2e-231 799.7
Bpe10g00785 . 1 768 U-box Gene Family AT1G67530 54.1 1.8e-206 716.1
Bpe01g00378 . 1 365 U-box Gene Family AT4G21350 59.5 3.7e-117 418.3
Bpe02g01924 . 1 360 U-box Gene Family AT4G21350 61.3 5.9e-115 411.0
Bpe09g00300 . 134 457 U-box Gene Family AT3G07360 52.6 1.6e-84 309.7
Bpe06g00548 . 134 457 U-box Gene Family AT3G07360 61.2 5.2e-83 304.7
Bpe10g00477 . 134 457 U-box Gene Family AT3G07360 54.9 5.5e-77 284.6
Bpe11g01609 CCT 240 464 U-box Gene Family AT1G71020 55.8 5.7e-62 235.3
Bpe11g00764 CCT 254 421 U-box Gene Family AT1G71020 56.6 7.5e-46 181.8
Bpe08g01367 CCT 227 419 U-box Gene Family AT1G71020 50.5 8.3e-45 178.3
Bpe11g01609 CCT 1 668 U-box Gene Family AT1G23030 54.4 4.8e-106 382.1
Bpe11g00764 CCT 89 632 U-box Gene Family AT2G28830 58.3 8.1e-103 371.3
Bpe08g01367 CCT 89 629 U-box Gene Family AT2G28830 57.2 7.1e-99 358.2
Bpe11g00764 CCT 1 630 U-box Gene Family AT3G46510 68.1 4.9e-157 551.6
Bpe08g01367 CCT 1 629 U-box Gene Family AT3G46510 64.2 2.0e-142 503.1
Bpe11g00764 CCT 8 621 U-box Gene Family AT3G54850 54.5 4.6e-104 375.6
Bpe02g01755 . 34 643 U-box Gene Family AT5G42340 66.1 1.9e-140 496.5
Bpe11g01122 . 1 714 U-box Gene Family AT1G29340 64.4 2.6e-228 788.5
Bpe04g01488 . 1 393 U-box Gene Family AT3G52450 56.7 6.0e-127 451.1
Bpe03g01192 . 1 393 U-box Gene Family AT3G52450 53.4 1.6e-119 426.4
Bpe04g01488 . 1 392 U-box Gene Family AT2G35930 55.8 5.0e-123 438.0
Bpe03g01192 . 1 392 U-box Gene Family AT2G35930 53.5 3.3e-119 425.2
Bpe06g00274 . 1 396 U-box Gene Family AT5G64660 50.6 1.1e-104 377.1
Bpe15g00290 . 1 448 U-box Gene Family AT3G49810 71.7 1.1e-179 626.3
Bpe13g00136 . 1 450 U-box Gene Family AT3G49810 70.1 1.9e-176 615.5
Bpe05g00017 . 1 450 U-box Gene Family AT3G49810 61.1 4.0e-150 528.1
Bpe15g00290 . 1 448 U-box Gene Family AT5G65920 67.8 3.5e-167 584.7
Bpe13g00136 . 1 450 U-box Gene Family AT5G65920 66.5 3.1e-163 571.6
Bpe05g00017 . 1 450 U-box Gene Family AT5G65920 61.6 1.5e-149 526.2
Bpe13g00949 . 30 876 U-box Gene Family AT2G45910 52.8 1.3e-234 809.7
Bpe02g01207 . 466 748 U-box Gene Family AT2G45910 50.2 4.6e-75 279.6
Bpe13g00261 . 28 503 U-box Gene Family AT5G40140 50.3 1.6e-60 230.7
Bpe13g01362 . 310 907 U-box Gene Family AT1G68940 54.2 5.5e-174 608.6
Bpe02g01758 CCT 4 813 U-box Gene Family AT1G76390 63.3 2.2e-276 948.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G76390 60.4 1.9e-267 918.7
Bpe02g01758 CCT 7 813 U-box Gene Family AT1G20780 64.1 1.7e-284 975.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G20780 60.2 1.3e-268 922.5
Bpe13g01504 . 1 758 U-box Gene Family AT1G27910 59.5 4.1e-248 854.4
Bpe10g00785 . 1 771 U-box Gene Family AT1G27910 57.5 1.8e-235 812.4
Bpe10g00007 . 1 598 U-box Gene Family AT5G67530 75.0 1.8e-262 901.7
Bpe13g00911 . 16 164 U-box Gene Family AT5G67530 52.9 1.1e-43 174.9
Bpe13g00538 CCT 1 523 U-box Gene Family AT1G04510 73.3 3.7e-224 774.2
Bpe14g01276 CCT 2 521 U-box Gene Family AT1G04510 72.4 4.5e-222 767.3
Bpe13g00538 CCT 1 487 U-box Gene Family AT2G33340 73.1 9.7e-211 729.6
Bpe14g01276 CCT 2 485 U-box Gene Family AT2G33340 72.7 4.5e-208 720.7
Bpe03g00897 . 10 279 U-box Gene Family AT3G07370 66.3 9.2e-105 376.7
Bpe09g00301 . 7 277 U-box Gene Family AT3G07370 59.8 2.3e-92 335.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010076 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 4 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00785 Bpe_Chr10 FPKM 0.797386 0.49043 4.927628 5.28593 0.580999 0.913491 0.792469 81.756111 78.489052 81.691475