Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00788 ATGTTTGGGGCTCAAGCTTCCGCCTCTGCCTTCGGTACTCCATCCACTCCACCTTTTGGAGCTCCATCCTCCACCCCCACATTTGGAACTCCTTCGTCGACTTCAGTCTTCGGAACTCCGTCGTCGCAGTCCTTCGGTTCTGGCTTTGGCCAATCGCTTTTCTCCACGCCTTTCCCCGCTCAACCCCCTCAGCAGCAGCAAGTGCAGCAAACTCCGATGTTTCAGCAGCTATCTTCTACTGGTCTCGGTTTCTCGACTCCATTTCCCGCGCCTCAGTCCACTCCCTTTCCAAATGCACAATTGACGACTCAGATGGCTCCTGTTACCCCTCTTCCCTTTTCTCTCGCGGATCGAGACATTCAAACAATTGTTGACGCTTACAAGGATGAACCTGGAAATCCTAAATATGCTTTCAAGCATTTGTTGTTTAGTGTTACTGATCCTCAATTTAGAGTGAAACCGGCGGGCGTATCACATATAATGTGGGCAGAAGCTATGGCAAAGATGGAAGGAATGGAAAGTAATGACCGAGAACGCTTATGGCCTCAGCTAATGCAGGGTTTCAAGGATCTTTCGCAGCGATTGAAGCTTCAAGATGAAGTCATTGTTTCTGATGCTGAAAGGTTACGTATGACTCAAAGCAATGTGAAAATGCTTCAAAGACATTTTCAAGCTGACACTCTCCCATGGATTCAAAGATTAAAACAGAAAGAGCAAGTTCTTCAACGCCGTCTTTTGAGGGTAATGAGAATAGTGGAAGCGCTGGAGACTAAGGGTTGCCGACTGCCCTTAACGAAAGGGGAAGTTGAATTGGCTGAGAAGTTGGCTGCAGTAACTAGGCAGCTGAAAGGATCTGGAGCAGAACTATCCAGGAGAGTGCAAAACCTGTTGGCTGTTACTCGAGTTCAAGCTGGGGCTATTGGTGCTGGTGGCTCATTTTACCTTCCCACATCTGCCAAAATACAGGAACAGAGTTTTGTTGATTTGCAGGGGGTTATACAGCAGCAAACTGAGGCGATTGCAAGGCTTGGGAGTGTTTTAAAGCGCGATGTTAGAGACATGGAGATCATAATGGCAGATGACAATGAAGCAATAGAAGAATCTGTTTTTTCGTGA 1116 47.22 MFGAQASASAFGTPSTPPFGAPSSTPTFGTPSSTSVFGTPSSQSFGSGFGQSLFSTPFPAQPPQQQQVQQTPMFQQLSSTGLGFSTPFPAPQSTPFPNAQLTTQMAPVTPLPFSLADRDIQTIVDAYKDEPGNPKYAFKHLLFSVTDPQFRVKPAGVSHIMWAEAMAKMEGMESNDRERLWPQLMQGFKDLSQRLKLQDEVIVSDAERLRMTQSNVKMLQRHFQADTLPWIQRLKQKEQVLQRRLLRVMRIVEALETKGCRLPLTKGEVELAEKLAAVTRQLKGSGAELSRRVQNLLAVTRVQAGAIGAGGSFYLPTSAKIQEQSFVDLQGVIQQQTEAIARLGSVLKRDVRDMEIIMADDNEAIEESVFS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14044295 14046841 - Bpe003093.1 Bpe10g00788 109910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00788 371 MobiDBLite consensus disorder prediction 1 67 - -
Bpe10g00788 371 PANTHER NUCLEOPORIN P54 4 363 IPR024864 GO:0005643
Bpe10g00788 371 Pfam Nucleoporin complex subunit 54 153 298 IPR025712 -
Bpe10g00788 371 PANTHER NUCLEOPORIN P54 4 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00788 K14308 NUP54, NUP57; nuclear pore complex protein Nup54 - jre:109003151 518.079
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1170 . . Bda01g01683 . . Bpe10g00788 . Bma15g00239 Cmo04g01917 . . . . . Sed06g1736 . Cpe01g01605 Bhi07g01894 Tan04g0086 Cmetu10g0989 Lac13g0075 Hepe10g1532 . . . . . . . . . . . Cone8ag0735 . Lsi04g00661 . . Cme10g00640 Blo06g00827 . . . . . . . . . . Cma04g01820 . Car04g01833 . . . . . . . . . . Cla11g01358 Cam11g1414 Cec11g1443 Cco11g1439 Clacu11g1573 Cmu11g1393 Cre11g1814 . . . .
Vvi1g1218 . . . . . Bpe10g00788 . Bma15g00233 Cmo04g01925 Cmo18g00695 . Cma18g00706 . Car18g00652 Sed06g1743 Cpe09g00582 Cpe01g01612 Bhi07g01913 Tan04g0060 Cmetu10g0980 Lac13g0060 Hepe10g1524 . . . . . . . . . . . . . Lsi04g00670 . . Cme10g00649 Blo06g00833 . . . . . . . . . . Cma04g01829 . Car04g01843 . . . . . . . . . . Cla11g01349 Cam11g1407 Cec11g1433 Cco11g1427 Clacu11g1564 Cmu11g1385 Cre11g1805 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007686 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00788 Bpe_Chr10 FPKM 12.424727 14.814675 16.724541 17.368614 20.128124 18.49365 19.164127 27.113686 25.810125 27.048353