Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00789 ATGGCGCTCGCGTTTGATGAATTTGGTAGGCCTTTCATTATAATCAAGGAGCAAGGGCAGAAGAGGCGATTGAGAGGTCTCGATGCTCAAAAGGCCAACATTTCCGCTGCGAAAGCTGTTGCTCGCATCCTCAGGACTTCGCTCGGCCCTAAAGGCATGGACAAGATGCTGCAGAGCCCCGATGGCGATATTACTATCACCAATGACGGAGCAACAATTTTGGAGCAAATGGATGTTGACAATCAAATTGCAAAGCTAATGGTTGAGCTATCACGCAGTCAGGATTATGAAATAGGTGATGGGACAACAGGTGTTGTTGTAATGGCTGGCGCATTATTAGAACAAGCTGAACATCTGTTAGAACGGGGCATCCATCCCATTAGAGTTGCAGAAGGCTATGAACTGGCATCTAGGATTGCCGTTGAGCATCTGGAACACATATCTCAGAAATTTGATTTTGGACCAACTAATATTGAGTCACTTGTTCAAACTTGCATGACAACTTTATCTTCTAAGATTGTAAACCGATGCAAGCGTGATTTGGCTGAGATTTCAGTTAAAGCTGTTCTTGCTGTTGCTGATCTGGAGAGAAAGGATGTTAATTTAGATTTGATAAAAGTAGAGGGAAAAGTTGGGGGAAAATTGGAAGATACCGAGCTTGTCTATGGTATTATTGTTGACAAAGATATGAGTCATCCTCAGATGCCAAAGAAAATTGAAGATGCAAAAATTGCTATCTTGACTTGCCCCTTTGAGCCTCCGAAGCCAAAGACAAAACATAAGGTTGATATTGACACAGTGGAGAAATTCCAGACCTTGCGCCAACAAGAGCAGAAGTATTTTGATGACATGGTTCAGAAATGCAAGGATGTTGGTGCTACTTTGGTAATCTGTCAGTGGGGTTTTGATGATGAGGCAAATCATCTGTTGATGCACCGAAACTTGCCTGCTGTTAGATGGGTTGGTGGTGTAGAGTTGGAGCTGATAGCCATAGCAACAGGTGGAAGAATTGTCCCCAGGTTCCAGGAATTGACTCCAGAAAAGCTGGGAAAGGCTGGTTTGGTTCGAGAAAAAGCATTTGGTACTACAAAAGATCGAATGTTATACATTGAACACTGTGCAAATTCAAAGGCTGTGACCATATTTATTCGAGGAGGTAGTAACAAAATGATGGTAGAGGAGACAAAACGCAGTATCCATGATGCTTTATGTGTGGCAAGGAATCTCATTCGCAACAATTCTATTGTATATGGTGGTGGATCTGCAGAAATTTCCTGCTCAATCGCAGTGGAGGCAGCTTCAGATAGGTACCCGGGAGTGGAACAGTATGCTATCAGAGCCTTTGCAGATGGTTTGGACTCTGTTCCGATGGCACTAGCAGAGAATAGTGGTCTTCAACCAATTGAAACTCTTTCTGCAGTAAAATCTCAACAAATTAAGAAACGGTGGCCTGTGAAATCTGCAAAATACATATTAGATTTACTAAGAAATGCTGAGAGTAATGCTGAAGTCAAGGGCCTAGACGTCGATGCACTTGTTGTGTCTCACATCCAGGTAAACCAAGCAGCCAAACAAAGATGCTGGACCTATCGTGCGCATGGAAGAATCAAGGGTGAGTTTTGGGATATGGAGAAATATAAGTTTAGTCATTTTGTTCGCATCTATTTTACCAAAATTCGCTGTGGCAGCCTATATGTCGTCTCCCTGCCACATCTAGATAATTTTGTCCGAGAAATAAGAACCTGTAAAGAAAAAGGTAATTGA 1764 42.52 MALAFDEFGRPFIIIKEQGQKRRLRGLDAQKANISAAKAVARILRTSLGPKGMDKMLQSPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAEHLLERGIHPIRVAEGYELASRIAVEHLEHISQKFDFGPTNIESLVQTCMTTLSSKIVNRCKRDLAEISVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKKIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKAFGTTKDRMLYIEHCANSKAVTIFIRGGSNKMMVEETKRSIHDALCVARNLIRNNSIVYGGGSAEISCSIAVEAASDRYPGVEQYAIRAFADGLDSVPMALAENSGLQPIETLSAVKSQQIKKRWPVKSAKYILDLLRNAESNAEVKGLDVDALVVSHIQVNQAAKQRCWTYRAHGRIKGEFWDMEKYKFSHFVRIYFTKIRCGSLYVVSLPHLDNFVREIRTCKEKGN 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14047584 14054977 - Bpe003094.2 Bpe10g00789 109911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00789 587 CDD Ribosomal_L22 484 536 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bpe10g00789 587 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Bpe10g00789 587 PRINTS Tailless complex polypeptide 1 (chaperone) signature 381 403 IPR017998 GO:0140662
Bpe10g00789 587 PRINTS Tailless complex polypeptide 1 (chaperone) signature 94 113 IPR017998 GO:0140662
Bpe10g00789 587 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Bpe10g00789 587 PRINTS Tailless complex polypeptide 1 (chaperone) signature 415 427 IPR017998 GO:0140662
Bpe10g00789 587 ProSitePatterns Chaperonins TCP-1 signature 3. 94 102 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bpe10g00789 587 TIGRFAM uL22_arch_euk: ribosomal protein uL22 479 538 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bpe10g00789 587 CDD TCP1_epsilon 6 480 IPR012718 GO:0005524|GO:0006457|GO:0051082
Bpe10g00789 587 PANTHER BNAA08G19100D PROTEIN 5 485 - -
Bpe10g00789 587 SUPERFAMILY GroEL-intermediate domain like 156 413 IPR027410 -
Bpe10g00789 587 Pfam Ribosomal protein L22p/L17e 477 537 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bpe10g00789 587 TIGRFAM chap_CCT_epsi: T-complex protein 1, epsilon subunit 3 497 IPR012718 GO:0005524|GO:0006457|GO:0051082
Bpe10g00789 587 SUPERFAMILY GroEL equatorial domain-like 21 478 IPR027413 -
Bpe10g00789 587 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bpe10g00789 587 ProSitePatterns Chaperonins TCP-1 signature 1. 45 57 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bpe10g00789 587 Gene3D - 37 482 IPR027413 -
Bpe10g00789 587 SUPERFAMILY Ribosomal protein L22 477 537 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bpe10g00789 587 Gene3D - 150 413 IPR027410 -
Bpe10g00789 587 Gene3D GroEL 222 376 IPR027409 -
Bpe10g00789 587 SUPERFAMILY GroEL apical domain-like 217 385 IPR027409 -
Bpe10g00789 587 Pfam TCP-1/cpn60 chaperonin family 40 496 IPR002423 GO:0005524
Bpe10g00789 587 PANTHER CHAPERONIN 5 485 IPR017998 GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00789 K09497 CCT5; T-complex protein 1 subunit epsilon - tcc:18609635 899.042
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00885 Bpe-Chr7:14948495 Bpe10g00789 Bpe-Chr10:14047584 8.53E-26 dispersed
Bpe10g00789 Bpe-Chr10:14047584 Bpe13g00366 Bpe-Chr13:11423975 1.18E-79 dispersed
Bpe12g00486 Bpe-Chr12:10670294 Bpe10g00789 Bpe-Chr10:14047584 1.10E-25 dispersed
Bpe10g00789 Bpe-Chr10:14047584 Bpe11g01812 Bpe-Chr11:14500392 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1223 . . . . . Bpe10g00789 . . Cmo04g01926 Cmo18g00693 . . . . . . Cpe01g01613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g01830 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004994 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 0 1 1 1 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00789 Bpe_Chr10 FPKM 14.656766 14.006217 3.545232 2.42055 35.992043 35.329895 32.556759 0.0 0.0 0.0