Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00824 ATGGCGCCAAAACGAAACAAGAGCCGAAGTTCTTCTCCGGACCCACATGGAATGTTTGCTGGGATGTTCATTTTCTTAGTCCAAAAGGGAGTTCAAGCTCGTCGATTGCAGGTATGGAAGCAAAAGTTGGAGCAGAACGGGGCTAGTATTGAGGAACGCTTTTCAAAAGGCGTCACTCATGTATTTGCAGTGAGCTTGGTTGAGCTTCTCGAGAAACTTGACAAAGAGCGGTTGTCGCGATTCAAAGGGAGGATTCTCCTTTATCAATGGCTAGAGGATAGTCTGAGTCTGGGAGAAAAAGTTTCAGAGGATTTATACCATATAAATCTGGATTTGGATATTGTAGATAAACAAGAGAAGTTTTTGGCCTTTAAAACCGATGGTGAAAAGATTGCGAAAGGTAATGAAGCATCATTGACGTACAGTCCACCTGATATGAACAGAAACATAACTGAGATATTTGGAAAACTTATCAACATTTACAGAGCATTGGGTGATGAAAGAAGATCCTTTAGCTACTACAAGGCTATTTCAGTAATTGAGAAGGTACCATTTAGAATTGAGAACGCCGAACAAGTCAAAGACCTGCCCAGCATTGGAAAGTCATTGCAGGATCATATTCAGGAGATTGTGGACACGGGGAAATTGTCAAAGTTGGAGCACTTTGAGACAGATGAAAAAGTAAAGACAATCTCCCTGTTTGGAGAAATATGGGGCGTTGGTCCTGCCACAGCATTAAAATTATACGATAAAGGGCACCGTACGCTTGATGATTTGAGGAAGGAGGAATCATTAACCAATGCCCAGAAGATAGGGTTGAAATATTTTAATGATATCCGGCAGAGGATCCCTCGCCATGAGGTTCAGGAAATGGAACTACTTTTGCAAAAGGCTGGGGAACATGTTTTGCCTGGGGTTGATATTGTTTGTGGAGGATCATTTAGGCGAGGTAAAGCTTCCTGTGGGGATATGGACATTGTAATTACTCATCCTGATGGGAAGAGTCATAAAGGCTTTTTAGCACAATATATCAAGTATTTAAAGGAGATGAAGTTCTTGAGAGAGGATTTAATATTCAGCACTCACAGTGAGGAGGGAGCTGATTCTGGTGTCGACACGTATTTCGGCCTTTGCACATATCCCGGGCGAGAGCTTAGACACCGAATAGATTTTAAGACAAAAAGCAAACATTTTCTTCTCATTTTTCTAGTATATCCAAGAGACATATATGCGTATGGGTTGATTGCATGGACAGGAAACGACGTAGTAAATAGGCGGCTAAGATTACTAGCAGAATCGAAAGGGTTTCGACTCGACGATACAGGTCTATTTCCTGCGACACACGGGTCTGGGGGTAAAAAGGGCGCAAAAGGGAGTGCAAGTTTAAAATTTGAGACAGAGAAAGAGGTGTTTGATTTCTTGGGATTTCCATGGCTCCAGCCAAATCAAAGGAATCTCTGA 1461 42.09 MAPKRNKSRSSSPDPHGMFAGMFIFLVQKGVQARRLQVWKQKLEQNGASIEERFSKGVTHVFAVSLVELLEKLDKERLSRFKGRILLYQWLEDSLSLGEKVSEDLYHINLDLDIVDKQEKFLAFKTDGEKIAKGNEASLTYSPPDMNRNITEIFGKLINIYRALGDERRSFSYYKAISVIEKVPFRIENAEQVKDLPSIGKSLQDHIQEIVDTGKLSKLEHFETDEKVKTISLFGEIWGVGPATALKLYDKGHRTLDDLRKEESLTNAQKIGLKYFNDIRQRIPRHEVQEMELLLQKAGEHVLPGVDIVCGGSFRRGKASCGDMDIVITHPDGKSHKGFLAQYIKYLKEMKFLREDLIFSTHSEEGADSGVDTYFGLCTYPGRELRHRIDFKTKSKHFLLIFLVYPRDIYAYGLIAWTGNDVVNRRLRLLAESKGFRLDDTGLFPATHGSGGKKGAKGSASLKFETEKEVFDFLGFPWLQPNQRNL 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14264358 14268197 + Bpe003128.3 Bpe10g00824 109946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00824 486 PANTHER DNA POLYMERASE TYPE-X FAMILY MEMBER 18 485 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bpe10g00824 486 SUPERFAMILY PsbU/PolX domain-like 225 280 - -
Bpe10g00824 486 Pfam DNA polymerase beta thumb 414 485 IPR029398 -
Bpe10g00824 486 SMART polxneu3 145 485 IPR002054 GO:0003677|GO:0003887
Bpe10g00824 486 Gene3D DNA polymerase, thumb domain 419 485 IPR037160 -
Bpe10g00824 486 SUPERFAMILY DNA polymerase beta, N-terminal domain-like 142 222 IPR027421 -
Bpe10g00824 486 Pfam DNA polymerase beta palm 282 393 IPR028207 -
Bpe10g00824 486 ProSiteProfiles BRCT domain profile. 14 108 IPR001357 -
Bpe10g00824 486 Gene3D BRCT domain 10 110 IPR036420 -
Bpe10g00824 486 Pfam Helix-hairpin-helix domain 147 212 IPR010996 -
Bpe10g00824 486 Gene3D Beta Polymerase, domain 2 282 418 IPR043519 -
Bpe10g00824 486 Gene3D - 137 221 IPR027421 -
Bpe10g00824 486 PRINTS DNA-polymerase family X signature 466 484 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bpe10g00824 486 PRINTS DNA-polymerase family X signature 415 428 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bpe10g00824 486 PRINTS DNA-polymerase family X signature 239 256 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bpe10g00824 486 PRINTS DNA-polymerase family X signature 309 323 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bpe10g00824 486 PRINTS DNA-polymerase family X signature 323 331 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bpe10g00824 486 PANTHER DNA POLYMERASE IV 18 485 - -
Bpe10g00824 486 Pfam Fingers domain of DNA polymerase lambda 233 279 IPR018944 GO:0003677|GO:0034061
Bpe10g00824 486 SUPERFAMILY Nucleotidyltransferase 282 485 IPR043519 -
Bpe10g00824 486 SUPERFAMILY BRCT domain 10 109 IPR036420 -
Bpe10g00824 486 Gene3D - 222 280 - -
Bpe10g00824 486 CDD NT_POLXc 148 484 IPR002054 GO:0003677|GO:0003887
Bpe10g00824 486 ProSitePatterns DNA polymerase family X signature. 312 331 IPR019843 GO:0016779
Bpe10g00824 486 PRINTS DNA-polymerase family X pol beta-like signature 413 420 IPR002008 GO:0003677|GO:0006281
Bpe10g00824 486 PRINTS DNA-polymerase family X pol beta-like signature 198 215 IPR002008 GO:0003677|GO:0006281
Bpe10g00824 486 PRINTS DNA-polymerase family X pol beta-like signature 270 284 IPR002008 GO:0003677|GO:0006281
Bpe10g00824 486 PRINTS DNA-polymerase family X pol beta-like signature 467 484 IPR002008 GO:0003677|GO:0006281
Bpe10g00824 486 PRINTS DNA-polymerase family X pol beta-like signature 310 329 IPR002008 GO:0003677|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00824 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-] - csv:101209170 734.947
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g773 . . . . . Bpe10g00824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010075 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00824 Bpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0