Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00836 ATGGATCTTATTCAGGTTTACTCGGATCCGAACGACGAAATGCAGAATGAAAGCCCTAAATCTCTTTCGTCTTCCCCCGAAGCTTCTCCTCCTCGCCTTCTTCCTTCCAAATCGGCGGCGCCGAAGGTTGACGACACTACCCTAGCTCTTGCGGTGGCTGGCGCGAACCAGACTATGTCTAAACCAATCGATCCGGTTCAGCACGTCGTTGCCTTCAATCCAACCTACGATCAGCTATGGGCGCCTATATACGGTCCTTCACATCCCTATGCGAAGGACGGAATTGCTCAGGGAATGCGAAATCACAAGCTGGGTTTTGTGGAAAATGCTTCGATTGAGTCGTTTGTTTTTGATGAGCAGTACAACACTTTCCACAAGTATGGCTACGCTGCGGACCCGTCTGCTTCAGCTGGATACAATTACGTCGGCGACATGGACGCTCTGCAGAAGAACGACGCGATTTCTGTGTACAACATACCCCAACACGAGCAGAAAAAGCGAAAAATTGAGAAAAAGAAGGAGCTGAATGAGGATGCAGATGAAGAACTCGATGAGGATTCTGCCGAGTTTGATAATCCAGCTACCGATGCGTGGTTGAAGAGGAATAGGAAGAGTCCTTGGTCGGGAAAGAAGGAAGGGCTGCAAACTGAGCTAACCGAGGAGCAGAAGAAGTATGCTGAAGAACACGCTAAGAAGAAAGCAGAAGAGAAAGGAGGGGAGAAGGCGGAAGTTATGGCAGACAAGAGTACTTTCCATGGTAAGGAGGAGAAAGATTATCAGGGTAGGTCCTGGATTGCACCGCCGAAGGATGCAAAAGCTTCAAACGACCATTGTTACATACCAAAAAGACTGGTCCATACTTGGAGTGGCCACACAAAGGGTGTGTCTGCAATTAGGTTTTTCCCTAAACATGGACACTTAATCTTATCTGCAGGGATGGACACTAAGGTGAAGATTTGGGACGTTTTCAATTCTGGAAAATGTATGAGAACCTACATGGGTCATTCACAGGCGGTCCGAGATATTTCATTCTGCAACGATGGGTCGAAGTTCTTAACTGCTGGCTACGATAAGAAGATAAAGTACTGGGACACAGAAACTGGCCAAGTGATATCGACTTTCTCGACTGGAAAGGTTCCTTATGTGGTTAAGCTCAATCCTGACGATGATAAGCAGAACATTCTGCTGGCTGGTATGAGTGATAAAAAGATTGTCCAGTGGGATATGAACACTGGACAAATCACTCAAGAGTATGATCAGCATTTGGGGGCTGTAAATACCATTACATTTGTTGATAATAACCGGAGATTTGTCACTTCGAGCGATGATAAATCGCTTCGAGTGTGGGAATTCGGTATTCCTGTTGTTATCAAGTATATTAGCGAGCCTCACATGCATTCAATGCCTTCGATCGCAGTGCATCCCAATTCAAATTGGATAGCTGCCCAGAGTTTAGACAATCAAATCCTCATATATGGCACTAGGGAGAGGTTCCAGTTGAATAAGAAGAAGAGATTTGCTGGTCATATTGTTGCAGGGTACGCTTGCCAGGTTAATTTCTCACCGGATGGGCGTTTTGTGACGTCTGGCGATGGTGAAGGAAGGTGCTGGTTTTGGGACTGGAAGAGTTGTAAAGTTTTCAGAACTCTTAAGTGTCATAGTGGAGTTTGCATTGGCTGTGAGTGGCATCCTTTAGAACAGAGTAAAGTAGCAACATGTGGCTGGGATGGATTGATAAAGTATTGGTAA 1749 45.85 MDLIQVYSDPNDEMQNESPKSLSSSPEASPPRLLPSKSAAPKVDDTTLALAVAGANQTMSKPIDPVQHVVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIESFVFDEQYNTFHKYGYAADPSASAGYNYVGDMDALQKNDAISVYNIPQHEQKKRKIEKKKELNEDADEELDEDSAEFDNPATDAWLKRNRKSPWSGKKEGLQTELTEEQKKYAEEHAKKKAEEKGGEKAEVMADKSTFHGKEEKDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKVPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIAVHPNSNWIAAQSLDNQILIYGTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVTSGDGEGRCWFWDWKSCKVFRTLKCHSGVCIGCEWHPLEQSKVATCGWDGLIKYW 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14344143 14345891 - Bpe003140.1 Bpe10g00836 109958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00836 582 Gene3D - 268 582 IPR015943 GO:0005515
Bpe10g00836 582 PANTHER PRE-MRNA-PROCESSING FACTOR 17 48 582 IPR032847 GO:0000398|GO:0071013
Bpe10g00836 582 SUPERFAMILY WD40 repeat-like 279 582 IPR036322 GO:0005515
Bpe10g00836 582 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 450 - -
Bpe10g00836 582 CDD WD40 284 582 - -
Bpe10g00836 582 Coils Coil 162 189 - -
Bpe10g00836 582 Coils Coil 211 231 - -
Bpe10g00836 582 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 369 - -
Bpe10g00836 582 MobiDBLite consensus disorder prediction 9 31 - -
Bpe10g00836 582 MobiDBLite consensus disorder prediction 201 243 - -
Bpe10g00836 582 Pfam WD domain, G-beta repeat 412 449 IPR001680 GO:0005515
Bpe10g00836 582 Pfam WD domain, G-beta repeat 283 321 IPR001680 GO:0005515
Bpe10g00836 582 Pfam WD domain, G-beta repeat 505 540 IPR001680 GO:0005515
Bpe10g00836 582 Pfam WD domain, G-beta repeat 326 364 IPR001680 GO:0005515
Bpe10g00836 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 322 IPR001680 GO:0005515
Bpe10g00836 582 SMART WD40_4 281 321 IPR001680 GO:0005515
Bpe10g00836 582 SMART WD40_4 543 582 IPR001680 GO:0005515
Bpe10g00836 582 SMART WD40_4 499 540 IPR001680 GO:0005515
Bpe10g00836 582 SMART WD40_4 411 450 IPR001680 GO:0005515
Bpe10g00836 582 SMART WD40_4 454 493 IPR001680 GO:0005515
Bpe10g00836 582 SMART WD40_4 325 364 IPR001680 GO:0005515
Bpe10g00836 582 SMART WD40_4 367 408 IPR001680 GO:0005515
Bpe10g00836 582 MobiDBLite consensus disorder prediction 1 41 - -
Bpe10g00836 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 450 IPR001680 GO:0005515
Bpe10g00836 582 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Bpe10g00836 582 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Bpe10g00836 582 PRINTS G protein beta WD-40 repeat signature 351 365 IPR020472 -
Bpe10g00836 582 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 322 - -
Bpe10g00836 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 373 IPR001680 GO:0005515
Bpe10g00836 582 MobiDBLite consensus disorder prediction 203 243 - -
Bpe10g00836 582 ProSitePatterns Trp-Asp (WD) repeats signature. 308 322 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00836 K12816 CDC40, PRP17; pre-mRNA-processing factor 17 - csv:101214854 1057.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00836 Bpe-Chr10:14344143 Bpe06g00115 Bpe-Chr6:1804140 7.38E-29 dispersed
Bpe11g01520 Bpe-Chr11:11288547 Bpe10g00836 Bpe-Chr10:14344143 7.77E-09 dispersed
Bpe03g00812 Bpe-Chr3:28098339 Bpe10g00836 Bpe-Chr10:14344143 8.82E-52 transposed
Bpe06g00188 Bpe-Chr6:5594891 Bpe10g00836 Bpe-Chr10:14344143 1.99E-11 transposed
Bpe11g00175 Bpe-Chr11:1195405 Bpe10g00836 Bpe-Chr10:14344143 1.63E-06 transposed
Bpe10g00836 Bpe-Chr10:14344143 Bpe11g01771 Bpe-Chr11:14098276 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00836 Bpe_Chr10 FPKM 4.371981 6.676591 9.648548 9.644353 16.484142 9.887956 13.445015 34.187859 31.077494 41.886364