Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00840 ATGGAAACTGAAACTGAAATCCAGTTTGCAATGCCTTGTTATGTCATCAGCTACTCCAAACTCCGCAATTGGAACTCAGCTTCTCCTCCGCTCTACTTCAATGCCGGAATGATCATATTCCGGCCAAATACTCTAACTTACCGCAGCCTTCTTGAAACCCTCCGACTCACTCACTCCCCCGACCCATTTGCAGAAAAGAATTGCTTTTTTTTTTTGTCTCAATCCATAGGATCTAAACCATGGAGGTTTACTGGGAAGGAAGCAAACATGGACAGAGACGAGATCAAGAGTTTAGTGGCCAAATGGTGGGAGATTTACAACGATCCTTCACTGGATTTCAAGCCAGAAAGTGTCGTTACTTCTGCTGAAGATGAAGAAGAAGCTTTCTCCAGGTCGTCATTAATGGCTGCCATGCCTAAACGCACAGTTTCTTGCATTTGTGCACCTTCTGCTGCATGA 459 44.66 METETEIQFAMPCYVISYSKLRNWNSASPPLYFNAGMIIFRPNTLTYRSLLETLRLTHSPDPFAEKNCFFFLSQSIGSKPWRFTGKEANMDRDEIKSLVAKWWEIYNDPSLDFKPESVVTSAEDEEEAFSRSSLMAAMPKRTVSCICAPSAA 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14369352 14370500 - Bpe003146.1 Bpe10g00840 109962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00840 152 PANTHER GLYCOGENIN SUBFAMILY MEMBER 76 152 - -
Bpe10g00840 152 PANTHER GALACTINOL SYNTHASE 4 27 69 IPR030515 GO:0006012|GO:0047216
Bpe10g00840 152 PANTHER GLYCOGENIN SUBFAMILY MEMBER 27 69 - -
Bpe10g00840 152 PANTHER GALACTINOL SYNTHASE 4 76 152 IPR030515 GO:0006012|GO:0047216
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00840 K18819 GOLS; inositol 3-alpha-galactosyltransferase [EC:2.4.1.123] - csin:114299202 142.124
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00781 Bpe-Chr4:5033815 Bpe10g00840 Bpe-Chr10:14369352 4.97E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g682 . . . . . Bpe10g00840 . Bma15g00183 . Cmo18g00799 . Cma18g00795 . Car18g00725 Sed06g1642 Cpe09g00507 . Bhi07g01735 Tan04g1243 Cmetu10g1390 Lac13g0196 Hepe10g1636 . . Cla05g02546 Cam05g2736 Cec05g2767 Cco05g2807 Clacu05g2737 Cmu05g2590 Cre05g2704 Cone13ag1046 Cone19ag1035 . . Lsi04g00555 Csa05g02333 Chy10g00901 Cme10g00527 Blo06g00879 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0035314 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00840 Bpe_Chr10 FPKM 4.386491 4.553865 2.205537 3.037865 9.372731 8.622968 10.371685 2.251222 2.008082 2.065456