Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00858 ATGATTTTTTTCTGGGTTTCTCTCTGTTTCTGGTATTTTGCTGCTCTTCCTCAGATTTCTTCTGGGCAGCTTCCTTCGGCTGAAACCAGAATTCTTTTCCAAATACAGAAGAATTTAGAGTATCCAGATGTTCTCAAAAACTGGTCAAGTTGGACAAATTTCTGCCAGTTACCCTCTTCACCTTCTCTGTCAATCCTCTGTTCTGATAATCACACAACAGAGCTAACCGTTGTCGGAAATAAGACGAAAATGCTGTCGGAAAATTTCTCCATTGATTCCCTTTTCACTGATTTAACGAAGCTCTCTTATTTAAAATCAGTGTCTTTAGTTTCATTGGGAATATGGGGCCCTTTGCCACCAAAAATCAAACGCCTTTCCGCCATGGAAACGATCGATTTGAGCTCGAATTTTATTGATGGAAATATTCCCTCTTCTATTTCAACGTTTCCAAGTCTGAAAACGTTGATTTTAGCGAACAACCTCTTTAATGGCAGTGTTCCAGATCTGAAATCCTTGTCAAATCTTGAAGAGCTGGATTTGAGCTTTAATCGCCTTGGCCCAGAATTTCCCTCTCTGAGCTCTGCTATTTCAACTTTAATTCTTAAAAACAACTCTTTTCGAGCTCAGATTCCTTCCAATTTCATAAATTTCAATAAAACCCAGCGATTCGACATATCTTTCAACAGATTCTTCGGCGCTGCTCCGTCCTCTCTGTTTTCACTTCCTTCCCTTCAATTTCTCAACTTGGCTAACAACGAACTGAATGGATTGATTTCTGCAAATTTAAGCTGCAGCAAAGAGCTGAAATTCATCGACATCTCGAACAATTTTTGTACCGGAAAATTGCCAGATTGTATGTCGTCGACTTCGTCAAATCGGACAGTTATTACTTCATGGAACTGTTTGTCAAGTGGAGACTCGAAGCTCCAGCATCCGGCGTCGTTTTGTCAGAAAGAAGCAATGGCGGTGAAACCTCCACCCAAAGATCAAACGCCGGAAACCGGCCACAAACTGGGCCTCATGCTGGGGGTAATCGGAGGCGTTATAGTGCTCGCCGGCGTTGCTCTATTGGTGGTCTTTATGATTTTTAGTAGGAGAAGAAGAGGAGGGAGCGAGAAGAAGAACCTATCCGTTGCCGATAAACTCTCTGTTCGTAGCTCCCCGCTTCTTCCGATCAATGAACCAAGAAGAGTGGCCCAGACAATGAGAATAACAGCACTGGGTCTTCCTCCTTATCGAGTTTTCACAGTGGAAGAGATTGAAGAATCAACCAGCAACTTCGACCCATTAAATTTAGTGGGAGAAGGATCTCAAGAACAGCTGTATAAAGGGTGGCTCAGTGATGGCTCTGTGGTCCTAATCAAGTGCCTGAAAAGGAAGTCCAAGCATTTTACTCTGTCCATGGGGCAGCATATTGATGTGTTGCCTAATTTGAGGCATAGGCATTTGGTCAGTGTTCTTGGCCACTGCATTGTCACTTATCAGGACCATCCAAACACAGCTGCCACTCTCTTCGTCGTAATTGAGATGGTTTCTAACGGTTCATTGAGGGATCATTTAATCGATTGGAGGAAGAAGGAGATGCTGAAATGGCCTCAGAGAATGGCGATATCAATAGGTGCGGCCCGGGGAATTCAGTTTTTGCATAGTGGGGTCGCACCTCCGATTTTGGGAAACGGTTTGAAGATTGAGAATGTATTGTTGGACGACACACTCACAGCAAAAATAAGCAACTATTTCATTCCCTTGCCATTTAATGGATCGGAGGAACCAAGCAGAAATGAAAATGCAGAGAAGGAAGACATCTATCAATTCGGTGTAGTCCTATTAGAAGTCATCACTGGCAAGCCAATTACATCTACTAGTGAAATAACTGAGCTGAGAAACCAACTAGATAAGAGCTTGATGGAACCAGCTTTGAAACTAAGAGGTTTGATCGATCCTTCGATGCACGGCTCTTTCGCATATGAATCACTAAAGACGGCAGTGCAAATCACGATAAACTGTCTGAGCAAAGATCCGAGTAAACGCCCTTCGATCGAAGACGTTCTTTGGAATTTGCAGTACTCAATGCAAGTTCAAGAAGGGTGGACCAGCAGTGGAAACCTCAGCATGCAGATTTAG 2124 43.17 MIFFWVSLCFWYFAALPQISSGQLPSAETRILFQIQKNLEYPDVLKNWSSWTNFCQLPSSPSLSILCSDNHTTELTVVGNKTKMLSENFSIDSLFTDLTKLSYLKSVSLVSLGIWGPLPPKIKRLSAMETIDLSSNFIDGNIPSSISTFPSLKTLILANNLFNGSVPDLKSLSNLEELDLSFNRLGPEFPSLSSAISTLILKNNSFRAQIPSNFINFNKTQRFDISFNRFFGAAPSSLFSLPSLQFLNLANNELNGLISANLSCSKELKFIDISNNFCTGKLPDCMSSTSSNRTVITSWNCLSSGDSKLQHPASFCQKEAMAVKPPPKDQTPETGHKLGLMLGVIGGVIVLAGVALLVVFMIFSRRRRGGSEKKNLSVADKLSVRSSPLLPINEPRRVAQTMRITALGLPPYRVFTVEEIEESTSNFDPLNLVGEGSQEQLYKGWLSDGSVVLIKCLKRKSKHFTLSMGQHIDVLPNLRHRHLVSVLGHCIVTYQDHPNTAATLFVVIEMVSNGSLRDHLIDWRKKEMLKWPQRMAISIGAARGIQFLHSGVAPPILGNGLKIENVLLDDTLTAKISNYFIPLPFNGSEEPSRNENAEKEDIYQFGVVLLEVITGKPITSTSEITELRNQLDKSLMEPALKLRGLIDPSMHGSFAYESLKTAVQITINCLSKDPSKRPSIEDVLWNLQYSMQVQEGWTSSGNLSMQI 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14465764 14468450 - Bpe003162.1 Bpe10g00858 109980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00858 707 Gene3D Transferase(Phosphotransferase) domain 1 511 588 - -
Bpe10g00858 707 Gene3D Transferase(Phosphotransferase) domain 1 589 699 - -
Bpe10g00858 707 SUPERFAMILY Protein kinase-like (PK-like) 406 687 IPR011009 -
Bpe10g00858 707 Gene3D Phosphorylase Kinase; domain 1 399 497 - -
Bpe10g00858 707 ProSiteProfiles Protein kinase domain profile. 427 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe10g00858 707 Gene3D Ribonuclease Inhibitor 25 324 IPR032675 -
Bpe10g00858 707 Pfam Protein tyrosine and serine/threonine kinase 433 578 IPR001245 GO:0004672|GO:0006468
Bpe10g00858 707 SUPERFAMILY L domain-like 51 310 - -
Bpe10g00858 707 PANTHER OS07G0166700 PROTEIN 3 704 IPR045272 GO:0004714|GO:0006468
Bpe10g00858 707 PANTHER BNAC05G10630D PROTEIN 3 704 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00858 - - - tcc:18610469 819.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01071 Bpe-Chr3:29928962 Bpe10g00858 Bpe-Chr10:14465764 2.47E-163 dispersed
Bpe10g00858 Bpe-Chr10:14465764 Bpe11g01501 Bpe-Chr11:11123567 4.73E-127 dispersed
Bpe10g00858 Bpe-Chr10:14465764 Bpe12g00086 Bpe-Chr12:630635 5.96E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g866 . . . . . Bpe10g00858 . Bma15g00250 . Cmo18g01192 . Cma18g01168 . Car18g01077 . Cpe09g00160 . Bhi07g01594 . . Lac13g0294 . . . Cla05g02463 Cam05g2650 Cec05g2685 Cco05g2719 Clacu05g2654 Cmu05g2506 Cre05g2622 Cone13ag0974 Cone19ag0964 . . Lsi04g00446 Csa05g02427 Chy10g00981 Cme10g00438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012316 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63549 PF07714 PK_Tyr_Ser-Thr 6.00E-13 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00858 Bpe_Chr10 FPKM 9.895795 10.493502 5.856811 6.480922 6.039381 4.376746 5.905356 6.251496 5.733641 6.338577