Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00877 CCGTGTTCTTGTTCTATGGCTTCCGAACCTGAAATTTCTGAAATGTTTGAGAGATTGATGAGTAGCAGAGACTTGTCTGTGTTCTTCCCCTTTTTATTCGGATACAGCCAAGAAAACCCGGATCGAGAAAACAGTGATAATAGATCAAACGGTAGAGATAGGATCATCCTCGTCAATCCTTTTACTCAAGGAATGGTGGTGATTGAAGGTGCTTCTAGCTTCGAATCGCTCCTCCGAGAACTGGGTAGCAAAAAGGGGCAACCACCTGCGTCAAAAGCCTCAATCGAAGCGATGGAATCTGAAGAAATACGAGAAGAGGGCGAGTGTACGATATGCTTAGATGAGTTTGAAATCGGTTGCGTAGTTAAAAAAATGCCGTGTGACCATAAATTTCACGGTGATTGTATAAAAAAGTGGCTTGAAATTCATGGGTCTTGTCCGGTTTGTAGATTTTTGATGCCTATTGATGAAGAAGTGGGGAAGAAGAGTGGGAGTGGCAGTGAGAGGGAGATTTGGGTCAGTTTTTCTTTCAGCAATGATAGCAGAAATTAG 552 42.75 PCSCSMASEPEISEMFERLMSSRDLSVFFPFLFGYSQENPDRENSDNRSNGRDRIILVNPFTQGMVVIEGASSFESLLRELGSKKGQPPASKASIEAMESEEIREEGECTICLDEFEIGCVVKKMPCDHKFHGDCIKKWLEIHGSCPVCRFLMPIDEEVGKKSGSGSEREIWVSFSFSNDSRN 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14566925 14567476 + Bpe003181.1 Bpe10g00877 109999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00877 183 Pfam Ring finger domain 108 150 IPR001841 -
Bpe10g00877 183 SUPERFAMILY RING/U-box 97 156 - -
Bpe10g00877 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 155 IPR013083 -
Bpe10g00877 183 PANTHER - 10 165 - -
Bpe10g00877 183 SMART ring_2 109 149 IPR001841 -
Bpe10g00877 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 165 - -
Bpe10g00877 183 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00877 Bpe-Chr10:14566925 Bpe01g00362 Bpe-Chr1:2276471 1.02E-22 dispersed
Bpe13g01426 Bpe-Chr13:19562537 Bpe10g00877 Bpe-Chr10:14566925 5.08E-12 dispersed
Bpe10g00877 Bpe-Chr10:14566925 Bpe12g00631 Bpe-Chr12:11956125 6.46E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00877 - - mnt:21398748 216.468