Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe10g00879 | ATGGGAAGGGTGAAACTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCCAAAAGGAAACATGGGATTATGAAGAAGGCTAATGAGTTATCAATATTGTGCGACATAGACATTGTTCTTCTCATGTTTTCACCTACAGGAAAACCCTCTTTATGCAGCGGAAAGCGCAGTTCGATTGAAGATGTCATTGCAAAGTTTGCCCAGCTAACTCCACAAGAAAGGGCTAAAAGCAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACTTTTAAGAAGTTAGACCATGACGTTAATATTGAAGAATTTTTGGGTACAAGGCATGATTTGGCTAGCCAAGCTAAGTTATTACAGGCTCAACTTTCAGAAGTACACAATAGATTGAGCTATTGGACGAATCCTGATAAGATCAATAGTGTAGAGCATTTGACCCAAATGGAAGATTCACTGAGGGAATCCCTCGGCCAAATTCAAACTCACAAGGAAAATCTACAGAAGCATCCACTTATTCCACTAGATTGCTCTAGTCAGACTGTCCTTGTTTTGCAGTTCCAAAATGCAATGCATATACCTTTTCGAATGGGCGCTGAGCAGCAGCTCCAACCTTTTTCGTGGATTCCAAGTAACGACAATCATCCTATGGTTTTGCCCGAGGACCCGCACTTCATTCCCCATCGTGATGTGGAGTGCTCTGCGAGTTCCTCCTTCGCTAGCTATTCTGGTTATTTTGGCACGGGTAGAAGTCCAGAGATGTCTAATTCTGGGCAAGATAATGGAGTTCTCCATGAACTGAGCAGAACAACAGCTCTAAGACCTCAATTGGGTGGGCAGTTTCCCTACCTGCCATACAATGTCAATTTTCTGAGCGATGCGAAATTCCAACCGACAGAGATGAATCCACCTGAAAATCACGTCGATTATCATATTAATGGGAGCTTTGAAACTCCGAGACCTGCATATGACTCCGCCAACCACAACTGGGCCTCAACTTCCGGCCCTTGCCCTGTAAATGTGTTTGACGACCGGCTCTATCCTCAGGCAAGTTGTGTCTCTCAAAACTGA | 1074 | 43.85 | MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGKPSLCSGKRSSIEDVIAKFAQLTPQERAKSRKLESLEALKKTFKKLDHDVNIEEFLGTRHDLASQAKLLQAQLSEVHNRLSYWTNPDKINSVEHLTQMEDSLRESLGQIQTHKENLQKHPLIPLDCSSQTVLVLQFQNAMHIPFRMGAEQQLQPFSWIPSNDNHPMVLPEDPHFIPHRDVECSASSSFASYSGYFGTGRSPEMSNSGQDNGVLHELSRTTALRPQLGGQFPYLPYNVNFLSDAKFQPTEMNPPENHVDYHINGSFETPRPAYDSANHNWASTSGPCPVNVFDDRLYPQASCVSQN | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 14576549 | 14578600 | + | Bpe003183.1 | Bpe10g00879 | 110001 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe10g00879 | 357 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 352 | - | - | |
Bpe10g00879 | 357 | Gene3D | - | 14 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Bpe10g00879 | 357 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe10g00879 | 357 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 | 1 | 352 | - | - | |
Bpe10g00879 | 357 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe10g00879 | 357 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe10g00879 | 357 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe10g00879 | 357 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe10g00879 | 357 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe10g00879 | 357 | SUPERFAMILY | SRF-like | 1 | 81 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe10g00879 | Bpe-Chr10:14576549 | Bpe06g00030 | Bpe-Chr6:367437 | 3.94E-17 | dispersed | |
Bpe15g00449 | Bpe-Chr15:15933486 | Bpe10g00879 | Bpe-Chr10:14576549 | 1.03E-29 | transposed | |
Bpe10g00879 | Bpe-Chr10:14576549 | Bpe11g01646 | Bpe-Chr11:12625769 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21979 | PF00319 | SRF-TF | 1.90E-18 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe10g00879 | - | - | jre:109009266 | 516.538 |