Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00879 ATGGGAAGGGTGAAACTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCCAAAAGGAAACATGGGATTATGAAGAAGGCTAATGAGTTATCAATATTGTGCGACATAGACATTGTTCTTCTCATGTTTTCACCTACAGGAAAACCCTCTTTATGCAGCGGAAAGCGCAGTTCGATTGAAGATGTCATTGCAAAGTTTGCCCAGCTAACTCCACAAGAAAGGGCTAAAAGCAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACTTTTAAGAAGTTAGACCATGACGTTAATATTGAAGAATTTTTGGGTACAAGGCATGATTTGGCTAGCCAAGCTAAGTTATTACAGGCTCAACTTTCAGAAGTACACAATAGATTGAGCTATTGGACGAATCCTGATAAGATCAATAGTGTAGAGCATTTGACCCAAATGGAAGATTCACTGAGGGAATCCCTCGGCCAAATTCAAACTCACAAGGAAAATCTACAGAAGCATCCACTTATTCCACTAGATTGCTCTAGTCAGACTGTCCTTGTTTTGCAGTTCCAAAATGCAATGCATATACCTTTTCGAATGGGCGCTGAGCAGCAGCTCCAACCTTTTTCGTGGATTCCAAGTAACGACAATCATCCTATGGTTTTGCCCGAGGACCCGCACTTCATTCCCCATCGTGATGTGGAGTGCTCTGCGAGTTCCTCCTTCGCTAGCTATTCTGGTTATTTTGGCACGGGTAGAAGTCCAGAGATGTCTAATTCTGGGCAAGATAATGGAGTTCTCCATGAACTGAGCAGAACAACAGCTCTAAGACCTCAATTGGGTGGGCAGTTTCCCTACCTGCCATACAATGTCAATTTTCTGAGCGATGCGAAATTCCAACCGACAGAGATGAATCCACCTGAAAATCACGTCGATTATCATATTAATGGGAGCTTTGAAACTCCGAGACCTGCATATGACTCCGCCAACCACAACTGGGCCTCAACTTCCGGCCCTTGCCCTGTAAATGTGTTTGACGACCGGCTCTATCCTCAGGCAAGTTGTGTCTCTCAAAACTGA 1074 43.85 MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGKPSLCSGKRSSIEDVIAKFAQLTPQERAKSRKLESLEALKKTFKKLDHDVNIEEFLGTRHDLASQAKLLQAQLSEVHNRLSYWTNPDKINSVEHLTQMEDSLRESLGQIQTHKENLQKHPLIPLDCSSQTVLVLQFQNAMHIPFRMGAEQQLQPFSWIPSNDNHPMVLPEDPHFIPHRDVECSASSSFASYSGYFGTGRSPEMSNSGQDNGVLHELSRTTALRPQLGGQFPYLPYNVNFLSDAKFQPTEMNPPENHVDYHINGSFETPRPAYDSANHNWASTSGPCPVNVFDDRLYPQASCVSQN 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14576549 14578600 + Bpe003183.1 Bpe10g00879 110001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00879 357 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 352 - -
Bpe10g00879 357 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Bpe10g00879 357 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 352 - -
Bpe10g00879 357 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00879 - - - jre:109009266 516.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00879 Bpe-Chr10:14576549 Bpe06g00030 Bpe-Chr6:367437 3.94E-17 dispersed
Bpe15g00449 Bpe-Chr15:15933486 Bpe10g00879 Bpe-Chr10:14576549 1.03E-29 transposed
Bpe10g00879 Bpe-Chr10:14576549 Bpe11g01646 Bpe-Chr11:12625769 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21979 PF00319 SRF-TF 1.90E-18 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00879 Bpe_Chr10 FPKM 24.529085 27.896845 13.363642 15.484678 6.650392 7.808398 6.28815 9.542562 12.465855 10.132922