Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00879 ATGGGAAGGGTGAAACTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCCAAAAGGAAACATGGGATTATGAAGAAGGCTAATGAGTTATCAATATTGTGCGACATAGACATTGTTCTTCTCATGTTTTCACCTACAGGAAAACCCTCTTTATGCAGCGGAAAGCGCAGTTCGATTGAAGATGTCATTGCAAAGTTTGCCCAGCTAACTCCACAAGAAAGGGCTAAAAGCAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACTTTTAAGAAGTTAGACCATGACGTTAATATTGAAGAATTTTTGGGTACAAGGCATGATTTGGCTAGCCAAGCTAAGTTATTACAGGCTCAACTTTCAGAAGTACACAATAGATTGAGCTATTGGACGAATCCTGATAAGATCAATAGTGTAGAGCATTTGACCCAAATGGAAGATTCACTGAGGGAATCCCTCGGCCAAATTCAAACTCACAAGGAAAATCTACAGAAGCATCCACTTATTCCACTAGATTGCTCTAGTCAGACTGTCCTTGTTTTGCAGTTCCAAAATGCAATGCATATACCTTTTCGAATGGGCGCTGAGCAGCAGCTCCAACCTTTTTCGTGGATTCCAAGTAACGACAATCATCCTATGGTTTTGCCCGAGGACCCGCACTTCATTCCCCATCGTGATGTGGAGTGCTCTGCGAGTTCCTCCTTCGCTAGCTATTCTGGTTATTTTGGCACGGGTAGAAGTCCAGAGATGTCTAATTCTGGGCAAGATAATGGAGTTCTCCATGAACTGAGCAGAACAACAGCTCTAAGACCTCAATTGGGTGGGCAGTTTCCCTACCTGCCATACAATGTCAATTTTCTGAGCGATGCGAAATTCCAACCGACAGAGATGAATCCACCTGAAAATCACGTCGATTATCATATTAATGGGAGCTTTGAAACTCCGAGACCTGCATATGACTCCGCCAACCACAACTGGGCCTCAACTTCCGGCCCTTGCCCTGTAAATGTGTTTGACGACCGGCTCTATCCTCAGGCAAGTTGTGTCTCTCAAAACTGA 1074 43.85 MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGKPSLCSGKRSSIEDVIAKFAQLTPQERAKSRKLESLEALKKTFKKLDHDVNIEEFLGTRHDLASQAKLLQAQLSEVHNRLSYWTNPDKINSVEHLTQMEDSLRESLGQIQTHKENLQKHPLIPLDCSSQTVLVLQFQNAMHIPFRMGAEQQLQPFSWIPSNDNHPMVLPEDPHFIPHRDVECSASSSFASYSGYFGTGRSPEMSNSGQDNGVLHELSRTTALRPQLGGQFPYLPYNVNFLSDAKFQPTEMNPPENHVDYHINGSFETPRPAYDSANHNWASTSGPCPVNVFDDRLYPQASCVSQN 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14576549 14578600 + Bpe003183.1 Bpe10g00879 110001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00879 357 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 352 - -
Bpe10g00879 357 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Bpe10g00879 357 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 352 - -
Bpe10g00879 357 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe10g00879 357 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00879 Bpe-Chr10:14576549 Bpe06g00030 Bpe-Chr6:367437 3.94E-17 dispersed
Bpe15g00449 Bpe-Chr15:15933486 Bpe10g00879 Bpe-Chr10:14576549 1.03E-29 transposed
Bpe10g00879 Bpe-Chr10:14576549 Bpe11g01646 Bpe-Chr11:12625769 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21979 PF00319 SRF-TF 1.90E-18 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00879 - - jre:109009266 516.538