Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00889 ATGACTGCGCCGACCTCGAAACCGACCATATCTCTCCCGCCGCGAGCTTCTGTGGAGTCGTTTTTGAAAGGCGGGAGCGGGTTGAGCTTCGATTGTAGCCCCGGGCCTATGACTCTCGTCTCTAGTTTCTTCTCTGATAACGATGACTGCAAGTCCTTCTCCCAGCTTCTCGCCGGAGCTATGTGCTCGCCTTCTGCAGGTGTTACTCGTGGGTCGGAGGAGGCAGAGATTAGGGATTCCGATGAAGACGATGGATTCCAACAGAAAAGGTCGGACAGCTCGGCGATTGGTGATTCCCATGGATTCTTTTCGATTGGTCAGGGACTGTTTGGATTGACGCACCGACAGGCCTTTGGACAGGCTACAGTTGAGGCTGTCCGATCTAATTCCTTGCAATTCCAACCAGATCATCACACGTCTTCCTCATCGAAACCTGGCATGTCCTCCATTCAGCAGATGGCGCTCTTAGTGCCAAACTCTGATGTTTCAGTGAAGGAATTTTCGGGTATTACCGAACCAGACCAGATTTATCAACCCTCTTCGTATACTGCTCATAAACCATCTTCGTATACTGCTCATAAACCAGCTGGTGATGGATACAACTGGAGAAAGTATGGACAGAAACAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAATGCACGAACCCGAGCTGTCCTGTCAAGAAAAAGGTCGAAAGGTCTACAAACGGCAGCGTGATTGAAATCACCTACAAGGGCCAGCACAATCACCAACCTCCTCTACCCAACAAGCGACTAAAAAATCCAGACGGAAATTCAAATATTTACGCCAATTTTGAGCTACTTAGGAATGTCCAAAACGAAAATTCAGAACTATCTGGTTCAAGCGACGGTGAGGAAATGGTCGAAACTGAAAATGGAGTGGACGAAAAAGACGAAGACGAACGAGATCCAAAGCGACGATGGTTATTGCAATGCAGGAGCATGGAGATCAGGGGTTCGTCGTCGCAGAGGGAACCCAAAATCGTTGTGCAGACGACGAGTGAGATCGATGTTTTGGAAGATGGGTATAGGTGGCGAAAATATGGGCAGAAAATTGTTAAAGGCAATCTTTACCCAAGGAGCTATTACAAATGCACAACTCCGGGATGCAGCGTTCGGAAGCATATAGAGCGCGCCGCCTCCGACCGTAAAGCTGTCATTACGACGTACGAAGGAAAGCACAACCACGACGTTCCGATGGCTAAGACTCACAATGATTTTACGAGCAAAGATGAAGCGATAGGGCGTTTACGTTTAAAAGAAGAACATACTAAATAG 1305 47.89 MTAPTSKPTISLPPRASVESFLKGGSGLSFDCSPGPMTLVSSFFSDNDDCKSFSQLLAGAMCSPSAGVTRGSEEAEIRDSDEDDGFQQKRSDSSAIGDSHGFFSIGQGLFGLTHRQAFGQATVEAVRSNSLQFQPDHHTSSSSKPGMSSIQQMALLVPNSDVSVKEFSGITEPDQIYQPSSYTAHKPSSYTAHKPAGDGYNWRKYGQKQVKGSEFPRSYYKCTNPSCPVKKKVERSTNGSVIEITYKGQHNHQPPLPNKRLKNPDGNSNIYANFELLRNVQNENSELSGSSDGEEMVETENGVDEKDEDERDPKRRWLLQCRSMEIRGSSSQREPKIVVQTTSEIDVLEDGYRWRKYGQKIVKGNLYPRSYYKCTTPGCSVRKHIERAASDRKAVITTYEGKHNHDVPMAKTHNDFTSKDEAIGRLRLKEEHTK 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14629200 14631007 - Bpe003193.1 Bpe10g00889 110011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00889 434 SUPERFAMILY WRKY DNA-binding domain 191 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe10g00889 434 MobiDBLite consensus disorder prediction 64 97 - -
Bpe10g00889 434 Gene3D WRKY domain 333 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe10g00889 434 Gene3D WRKY domain 183 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe10g00889 434 SMART WRKY_cls 348 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe10g00889 434 SMART WRKY_cls 196 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe10g00889 434 MobiDBLite consensus disorder prediction 72 89 - -
Bpe10g00889 434 ProSiteProfiles WRKY domain profile. 191 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe10g00889 434 SUPERFAMILY WRKY DNA-binding domain 340 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe10g00889 434 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 6 422 - -
Bpe10g00889 434 MobiDBLite consensus disorder prediction 284 315 - -
Bpe10g00889 434 Pfam WRKY DNA -binding domain 198 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe10g00889 434 Pfam WRKY DNA -binding domain 349 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe10g00889 434 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 6 422 IPR044810 GO:0003700
Bpe10g00889 434 ProSiteProfiles WRKY domain profile. 343 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00889 Bpe-Chr10:14629200 Bpe11g01442 Bpe-Chr11:10705132 2.83E-111 dispersed
Bpe02g02123 Bpe-Chr2:22613758 Bpe10g00889 Bpe-Chr10:14629200 1.95E-17 transposed
Bpe10g00889 Bpe-Chr10:14629200 Bpe11g00067 Bpe-Chr11:458552 1.58E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21981 PF03106 WRKY 5.10E-24 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00889 - - jre:109002894 434.491