Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00892 ATGTTGAATCGCTGTGGTGTACTTTATAGACGCATTACTAGCACCCTTGAACCTTCATATCAATGGAGAAATCTGTCACGCTTAACACCTATACTTCCCTATGCAGAATCACCGGAGCTTTTTCGTTCAGGCTCTTCGGTTCACTCCGCTTCCGAAAACTCGTGTTTTTACTTACTGGGTTTGTGCGGAGATATCGATTCGTTAAGGCAAATCCATGGTTTGCTTCTTGTTCATGGAATAGTCGGGGATATTCTGTTTGATACTAAATTAGTTAGTGTTTATGGTTCATTTGGGGACCTTCGGTCTGCCCGCTCAGTGTTTGATCAAATGCTCAATCCAGACCTTTATTCGTGGAAGGTAATGATTAGGTGGTATTTTTTGAATGATTTGTACTTTGAGATTATTGGATTATATAAATGTATGAATATTCATTGTAGAGAAAGCGATAACATTGTTTTTTCGATCGTGTTGAAAGCATGTAGCGAATTACGGGACAATACTACAGGGAGGAAGGTACACTGCCAAATTGTGAAGGTATGGTGTTCAGATAGTTTTGTCTGGACCTCTTTGGTTGATATGTATTCAAAGTGTGGGCAAATAGACTGCTCGGAGAAAGTGTTTGATCGGATTCTCGAGAGAAACGTTGTTTGTTGGACGTCGATGGTTGTGGGATATGTGCAGAATGACTGTCCTAAAGAGGGTTTGATTTTGTTCAATCGGATGAGAGAAGGGAATGTTGATGGAAACCAATTTACATTAGGCAGTCTAGTCTCTGCCTGTGCAAAGCTAGGAGCTTTGCACCAAGGGAAATGGGTACATGGATATGCCATTAAGAACGGTTTTGAATTCAACTCTTATACTTTGACGGCTCTTGTAGATATGTATGTTAAGTGTGGATACGTTAGCGATGCGCGTTTGCTATTTGATGAGCTTTCAAGCGTTGATCTTGTTTCATGGACAGCTATGATTGTTGGGTATGCACAAAAGGGCTGTCCTCACGAGGCCTTGAAATTGTTCGTTGATGCAAAATGGTCTCATCTCTTGCCTAATTCTATAACAACAGCTAGTGTACTTTCGTCATGTGCACAACTCCGGAATTTGAGTTTTGGAAGATCGATTCATGGTATTGGAATAAAACTCGGGTTAGAAGAATCTGTCGTAAGAAATGCTCTTGTGGATATGTATGCTAAATGCCATATGATAAATGATGCTCGTTTTATCTTCGAGATGATTTCAGACAAGGATTTGATTACTTGGAACTCGATTATATCTGGGTATTTGGAAAATGGATTTGCAAATGAATCCCTTCAACTTTTTCGTACAATGATCTCAGATTCGTTTGCTCCCGATGCAGTTAGTTTGGTGAGTGTCCTTTCAGCCTCAGCTTCTCTCAACGCTCTTCAGCTCGGGTCATCTCTTCACGCTTACTCTATTAAGGAGGGTCTTTTGTCATCTAATCTCTATTTAGGCACAGCTCTACTGAACTTTTATGCAAAATGTGGCGATACTAAATCAGCAAGAATGGTGTTTGATGGCATGGTGGAGAAGAACATCATCACATGGAGTGCTATGATCACTGGCTATGGTTTGCAGGGGGATGGAAATGGATCGCTCAAACTTTATAGTGATCTTATGAAGGAGGAACTAAAGCCGAACAAAGTGATCTTCACAGCAATTTTATCGGCTTGTAGCCATACCGGAATGGTTGCAGAAGGATGGAAGTACTTTAAATCCATGTGTGAGGAGTATAACTTCAGCCCTTCTTCAAAGCATTATGCTTGTATAGTTGATCTTTTGGCTCGGGCCGGTCGGCTTGAGGAAGCCTTGGATTTTATTGAGAAAATGCCTGTTCAACCAGAGGTTGGTTTGTTTGGAGCTTTTCTTCATGGTTGCGGATTATATGCGAGATTAGATCTTGCAGAAGTGGCAATCAAAAGAATGCTGAAGATGCATCCTGAAGAAAGTTGCTATTATGTGCTCATATCTAATCTGTATGCTTTGGATGGAAGATGGAATCAGGTTAATGAAGTTAGAGCACTAATGAAGAACAGAGGATTGAGCAAAAGCCCTGGTCTAAGCCTTGTAGAATCTGATATTAATGCTCATATTTTACAAAATTGA 2121 40.5 MLNRCGVLYRRITSTLEPSYQWRNLSRLTPILPYAESPELFRSGSSVHSASENSCFYLLGLCGDIDSLRQIHGLLLVHGIVGDILFDTKLVSVYGSFGDLRSARSVFDQMLNPDLYSWKVMIRWYFLNDLYFEIIGLYKCMNIHCRESDNIVFSIVLKACSELRDNTTGRKVHCQIVKVWCSDSFVWTSLVDMYSKCGQIDCSEKVFDRILERNVVCWTSMVVGYVQNDCPKEGLILFNRMREGNVDGNQFTLGSLVSACAKLGALHQGKWVHGYAIKNGFEFNSYTLTALVDMYVKCGYVSDARLLFDELSSVDLVSWTAMIVGYAQKGCPHEALKLFVDAKWSHLLPNSITTASVLSSCAQLRNLSFGRSIHGIGIKLGLEESVVRNALVDMYAKCHMINDARFIFEMISDKDLITWNSIISGYLENGFANESLQLFRTMISDSFAPDAVSLVSVLSASASLNALQLGSSLHAYSIKEGLLSSNLYLGTALLNFYAKCGDTKSARMVFDGMVEKNIITWSAMITGYGLQGDGNGSLKLYSDLMKEELKPNKVIFTAILSACSHTGMVAEGWKYFKSMCEEYNFSPSSKHYACIVDLLARAGRLEEALDFIEKMPVQPEVGLFGAFLHGCGLYARLDLAEVAIKRMLKMHPEESCYYVLISNLYALDGRWNQVNEVRALMKNRGLSKSPGLSLVESDINAHILQN 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14647711 14649831 + Bpe003196.1 Bpe10g00892 110014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 417 451 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 317 341 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 491 518 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 554 588 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 186 216 IPR002885 -
Bpe10g00892 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Bpe10g00892 706 PANTHER OS07G0578800 PROTEIN-RELATED 66 700 IPR045215 GO:0003723|GO:0009451
Bpe10g00892 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Bpe10g00892 706 Pfam Pentatricopeptide repeat domain 515 563 IPR002885 -
Bpe10g00892 706 Pfam E motif 634 696 IPR046848 -
Bpe10g00892 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 216 245 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 90 111 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 592 615 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 417 445 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 186 215 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 287 311 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 317 340 IPR002885 -
Bpe10g00892 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 568 674 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 383 468 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 173 269 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 469 567 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 270 369 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 43 172 IPR011990 GO:0005515
Bpe10g00892 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 66 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00892 Bpe-Chr10:14647711 Bpe04g01944 Bpe-Chr4:24313499 2.22E-49 dispersed
Bpe10g00892 Bpe-Chr10:14647711 Bpe02g01078 Bpe-Chr2:13895334 3.06E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00892 - - hbr:110650502 960.674