Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00892 ATGTTGAATCGCTGTGGTGTACTTTATAGACGCATTACTAGCACCCTTGAACCTTCATATCAATGGAGAAATCTGTCACGCTTAACACCTATACTTCCCTATGCAGAATCACCGGAGCTTTTTCGTTCAGGCTCTTCGGTTCACTCCGCTTCCGAAAACTCGTGTTTTTACTTACTGGGTTTGTGCGGAGATATCGATTCGTTAAGGCAAATCCATGGTTTGCTTCTTGTTCATGGAATAGTCGGGGATATTCTGTTTGATACTAAATTAGTTAGTGTTTATGGTTCATTTGGGGACCTTCGGTCTGCCCGCTCAGTGTTTGATCAAATGCTCAATCCAGACCTTTATTCGTGGAAGGTAATGATTAGGTGGTATTTTTTGAATGATTTGTACTTTGAGATTATTGGATTATATAAATGTATGAATATTCATTGTAGAGAAAGCGATAACATTGTTTTTTCGATCGTGTTGAAAGCATGTAGCGAATTACGGGACAATACTACAGGGAGGAAGGTACACTGCCAAATTGTGAAGGTATGGTGTTCAGATAGTTTTGTCTGGACCTCTTTGGTTGATATGTATTCAAAGTGTGGGCAAATAGACTGCTCGGAGAAAGTGTTTGATCGGATTCTCGAGAGAAACGTTGTTTGTTGGACGTCGATGGTTGTGGGATATGTGCAGAATGACTGTCCTAAAGAGGGTTTGATTTTGTTCAATCGGATGAGAGAAGGGAATGTTGATGGAAACCAATTTACATTAGGCAGTCTAGTCTCTGCCTGTGCAAAGCTAGGAGCTTTGCACCAAGGGAAATGGGTACATGGATATGCCATTAAGAACGGTTTTGAATTCAACTCTTATACTTTGACGGCTCTTGTAGATATGTATGTTAAGTGTGGATACGTTAGCGATGCGCGTTTGCTATTTGATGAGCTTTCAAGCGTTGATCTTGTTTCATGGACAGCTATGATTGTTGGGTATGCACAAAAGGGCTGTCCTCACGAGGCCTTGAAATTGTTCGTTGATGCAAAATGGTCTCATCTCTTGCCTAATTCTATAACAACAGCTAGTGTACTTTCGTCATGTGCACAACTCCGGAATTTGAGTTTTGGAAGATCGATTCATGGTATTGGAATAAAACTCGGGTTAGAAGAATCTGTCGTAAGAAATGCTCTTGTGGATATGTATGCTAAATGCCATATGATAAATGATGCTCGTTTTATCTTCGAGATGATTTCAGACAAGGATTTGATTACTTGGAACTCGATTATATCTGGGTATTTGGAAAATGGATTTGCAAATGAATCCCTTCAACTTTTTCGTACAATGATCTCAGATTCGTTTGCTCCCGATGCAGTTAGTTTGGTGAGTGTCCTTTCAGCCTCAGCTTCTCTCAACGCTCTTCAGCTCGGGTCATCTCTTCACGCTTACTCTATTAAGGAGGGTCTTTTGTCATCTAATCTCTATTTAGGCACAGCTCTACTGAACTTTTATGCAAAATGTGGCGATACTAAATCAGCAAGAATGGTGTTTGATGGCATGGTGGAGAAGAACATCATCACATGGAGTGCTATGATCACTGGCTATGGTTTGCAGGGGGATGGAAATGGATCGCTCAAACTTTATAGTGATCTTATGAAGGAGGAACTAAAGCCGAACAAAGTGATCTTCACAGCAATTTTATCGGCTTGTAGCCATACCGGAATGGTTGCAGAAGGATGGAAGTACTTTAAATCCATGTGTGAGGAGTATAACTTCAGCCCTTCTTCAAAGCATTATGCTTGTATAGTTGATCTTTTGGCTCGGGCCGGTCGGCTTGAGGAAGCCTTGGATTTTATTGAGAAAATGCCTGTTCAACCAGAGGTTGGTTTGTTTGGAGCTTTTCTTCATGGTTGCGGATTATATGCGAGATTAGATCTTGCAGAAGTGGCAATCAAAAGAATGCTGAAGATGCATCCTGAAGAAAGTTGCTATTATGTGCTCATATCTAATCTGTATGCTTTGGATGGAAGATGGAATCAGGTTAATGAAGTTAGAGCACTAATGAAGAACAGAGGATTGAGCAAAAGCCCTGGTCTAAGCCTTGTAGAATCTGATATTAATGCTCATATTTTACAAAATTGA 2121 40.5 MLNRCGVLYRRITSTLEPSYQWRNLSRLTPILPYAESPELFRSGSSVHSASENSCFYLLGLCGDIDSLRQIHGLLLVHGIVGDILFDTKLVSVYGSFGDLRSARSVFDQMLNPDLYSWKVMIRWYFLNDLYFEIIGLYKCMNIHCRESDNIVFSIVLKACSELRDNTTGRKVHCQIVKVWCSDSFVWTSLVDMYSKCGQIDCSEKVFDRILERNVVCWTSMVVGYVQNDCPKEGLILFNRMREGNVDGNQFTLGSLVSACAKLGALHQGKWVHGYAIKNGFEFNSYTLTALVDMYVKCGYVSDARLLFDELSSVDLVSWTAMIVGYAQKGCPHEALKLFVDAKWSHLLPNSITTASVLSSCAQLRNLSFGRSIHGIGIKLGLEESVVRNALVDMYAKCHMINDARFIFEMISDKDLITWNSIISGYLENGFANESLQLFRTMISDSFAPDAVSLVSVLSASASLNALQLGSSLHAYSIKEGLLSSNLYLGTALLNFYAKCGDTKSARMVFDGMVEKNIITWSAMITGYGLQGDGNGSLKLYSDLMKEELKPNKVIFTAILSACSHTGMVAEGWKYFKSMCEEYNFSPSSKHYACIVDLLARAGRLEEALDFIEKMPVQPEVGLFGAFLHGCGLYARLDLAEVAIKRMLKMHPEESCYYVLISNLYALDGRWNQVNEVRALMKNRGLSKSPGLSLVESDINAHILQN 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14647711 14649831 + Bpe003196.1 Bpe10g00892 110014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 417 451 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 317 341 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 491 518 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 554 588 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Bpe10g00892 706 TIGRFAM PPR: pentatricopeptide repeat domain 186 216 IPR002885 -
Bpe10g00892 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Bpe10g00892 706 PANTHER OS07G0578800 PROTEIN-RELATED 66 700 IPR045215 GO:0003723|GO:0009451
Bpe10g00892 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Bpe10g00892 706 Pfam Pentatricopeptide repeat domain 515 563 IPR002885 -
Bpe10g00892 706 Pfam E motif 634 696 IPR046848 -
Bpe10g00892 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 216 245 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 90 111 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 592 615 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 417 445 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 186 215 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 287 311 IPR002885 -
Bpe10g00892 706 Pfam PPR repeat 317 340 IPR002885 -
Bpe10g00892 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 568 674 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 383 468 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 173 269 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 469 567 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 270 369 IPR011990 GO:0005515
Bpe10g00892 706 Gene3D Tetratricopeptide repeat domain 43 172 IPR011990 GO:0005515
Bpe10g00892 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 66 700 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00892 - - - hbr:110650502 960.674
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00892 Bpe-Chr10:14647711 Bpe04g01944 Bpe-Chr4:24313499 2.22E-49 dispersed
Bpe10g00892 Bpe-Chr10:14647711 Bpe02g01078 Bpe-Chr2:13895334 3.06E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g79 . . . . . Bpe10g00892 . Bma15g00138 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0919 . . . . . . Blo06g00922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010395 1 1 1 1 1 1 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00892 Bpe_Chr10 FPKM 0.0 0.0 0.0 17.011799 0.0 0.0 0.0 0.0 0.0 0.0