Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00893 ATGGATATGGAGATCGATCTCTCTCGGCCAGATCCCCAAATCAAAGCTGATGAGATTTTCAGAGCGGCGGAGACCGGAGATTGTTCTATTTTCGAAGCTCTTTCTCGGGAGCAGTTTGTCAGTGCTTTTTCTCTGAGAAATGAGGATTGTCGGTCTCTCCTCCATGTTGCTGTCTCTTCAGGCCGTACTGAGATAGTGAAGTTGCTGTCTGCATCTGAGCAATCAGCTAGAGTGGTTAATAGTGTGGATGAAGAAGGGTGGGCACCGCTTCATTCTGCAAGTAGCATTGGAAATGCAGAAATAGTGGACATTTTATTAAGCATCGGTGCTAATGTAAATTTGAAAAATGATGGTGGTCGAGCTGCTCTTCACTATGCAGCCAGCAAAGGATGGTTAAAGATTGCTCAAACTCTGATTTCACACGGGGCAAAGCTCAATATGAAGGACAAGGTTGGTTGTACTCCACTGCATCGGGCTGCCAGCACAGGAAAGTCAGAGTTGTGCGAACTATTAATTGAGGAAGGAGCAGAGCTTGATGCTGTTGATAAAGCTGGTCAAACTCCTCTTATGCATGCAGTAATTTGTAACAACAGGGAGGTAGCTCTCCTTCTGGTTAGGCATGGAGCCGACCTGGATGTCGAAGACAAGGAAGGATATACAGTGCTGGGTATGTCCGGTGATCTCAGACCGGCGCTGATCGATGCTGCAAAGGCAATGTTTGAAGGATAA 729 46.5 MDMEIDLSRPDPQIKADEIFRAAETGDCSIFEALSREQFVSAFSLRNEDCRSLLHVAVSSGRTEIVKLLSASEQSARVVNSVDEEGWAPLHSASSIGNAEIVDILLSIGANVNLKNDGGRAALHYAASKGWLKIAQTLISHGAKLNMKDKVGCTPLHRAASTGKSELCELLIEEGAELDAVDKAGQTPLMHAVICNNREVALLLVRHGADLDVEDKEGYTVLGMSGDLRPALIDAAKAMFEG 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14653522 14655474 - Bpe003197.1 Bpe10g00893 110015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00893 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 77 225 - -
Bpe10g00893 242 Gene3D - 11 152 IPR036770 -
Bpe10g00893 242 Pfam Ankyrin repeats (3 copies) 152 215 IPR002110 GO:0005515
Bpe10g00893 242 Pfam Ankyrin repeats (3 copies) 21 116 IPR002110 GO:0005515
Bpe10g00893 242 Pfam Ankyrin repeat 119 150 IPR002110 GO:0005515
Bpe10g00893 242 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Bpe10g00893 242 Gene3D - 153 229 IPR036770 -
Bpe10g00893 242 PRINTS Ankyrin repeat signature 152 167 IPR002110 GO:0005515
Bpe10g00893 242 PRINTS Ankyrin repeat signature 200 214 IPR002110 GO:0005515
Bpe10g00893 242 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Bpe10g00893 242 SMART ANK_2a 184 213 IPR002110 GO:0005515
Bpe10g00893 242 SMART ANK_2a 151 180 IPR002110 GO:0005515
Bpe10g00893 242 SMART ANK_2a 118 147 IPR002110 GO:0005515
Bpe10g00893 242 SMART ANK_2a 85 114 IPR002110 GO:0005515
Bpe10g00893 242 SMART ANK_2a 49 78 IPR002110 GO:0005515
Bpe10g00893 242 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
Bpe10g00893 242 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Bpe10g00893 242 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Bpe10g00893 242 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Bpe10g00893 242 SUPERFAMILY Ankyrin repeat 19 223 IPR036770 -
Bpe10g00893 242 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Bpe10g00893 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 46 117 - -
Bpe10g00893 242 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Bpe10g00893 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 46 117 - -
Bpe10g00893 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 77 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00893 K06694 PSMD10; 26S proteasome non-ATPase regulatory subunit 10 - qsu:112012285 360.147
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00711 Bpe-Chr5:20668337 Bpe10g00893 Bpe-Chr10:14653522 1.74E-10 dispersed
Bpe07g01021 Bpe-Chr7:15804644 Bpe10g00893 Bpe-Chr10:14653522 6.66E-10 dispersed
Bpe08g00473 Bpe-Chr8:3082201 Bpe10g00893 Bpe-Chr10:14653522 8.21E-07 dispersed
Bpe09g00558 Bpe-Chr9:14343383 Bpe10g00893 Bpe-Chr10:14653522 1.32E-08 dispersed
Bpe10g00438 Bpe-Chr10:11822541 Bpe10g00893 Bpe-Chr10:14653522 4.46E-07 dispersed
Bpe10g00893 Bpe-Chr10:14653522 Bpe15g01241 Bpe-Chr15:20954241 3.76E-07 dispersed
Bpe10g00893 Bpe-Chr10:14653522 Bpe11g00198 Bpe-Chr11:1339993 4.88E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g73 . . . . . Bpe10g00893 . Bma15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0546 Cone9ag0556 . . . . Blo06g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009040 2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00893 Bpe_Chr10 FPKM 7.717949 10.067412 508.577087 491.630188 248.518372 185.229691 237.128784 0.872909 0.0 0.396491