Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00897 ATGAAGGCACCTATAAGAGTATTCAAGCGGAGTTCAGTTCCAGCTGGTTCTAGTTCCACAAACTCTTTTGATTCAGATACAGACTCCGATTCCAGACAAACTCTAAAGCCGCCGACAAGAACTTCTTTGGAACCTTCGCTTATACCACCGAAAATGAACTCCAACCCCTTTGATGACGACAATGGAAGAAGAGGGTTGGCTTTTAACTCGACGGGTATAAAAAGGATTTCTGTGAATCTGGGGGGATTTGAGAATCAGACTGTGCAAGACCTCGAGAATTATGCCATGTATAAAGCCGAGAAGACAACTGAATCTGTAAATAGCTGCTTGACGATCGCAGGGAATATTAGAGAAGATGCTACAAAGACCCTTGACATGCTGCATCATCAGGGAGAGCAGATAGAGAGGACTCATAGAATGGCTGCTGATATGCACAAGGATTTGAGTAAGGGAGAGAAGCTTTTGAACAATCTGGGGGGCATGTTTTCTAAACCTTGGAAGCCGAAGAAGACGAGAGAAATTTCGGGTCCTGTAATTACAGCAGGAGAGGCAGAAGTTGGGTGTAGCTCTACCACCCAAGGGAGGAAGATCGTCTTCAGGAGCACCTCTGTCGAGAGCATTGCAGAGAGGAGGTTAGTTTATGCTCCGTGCGCTGTCATTCAAACTTTAACCACAACTGATTGTAATTCGCTTGGTATGTACCCAATGTCTGTAACCAAGAAATTGATATCTTGCAAAATAAGTGGCACCCTTTTACAAACTTCAGTTGAGAAAGAAAAACAAGATGATGCTCTTTCAGATTTAAGTAACATATTGGGTGATCTCAAAAATATGGCTGTTGATATGGGAAGCGAAATCGACAGGCAAAACAAAGCTCTAGACCATCTCAGTGACGAAGTAGATGAGCTGAACTCTCGTGTGCAAGGCGCTAATCAACTAACACGACGCCTGGGTCGGGAAGTGATAGCTCATAAGTTTTGTTTATTTTTCTTTCCCATGATTGAATAA 1008 43.25 MKAPIRVFKRSSVPAGSSSTNSFDSDTDSDSRQTLKPPTRTSLEPSLIPPKMNSNPFDDDNGRRGLAFNSTGIKRISVNLGGFENQTVQDLENYAMYKAEKTTESVNSCLTIAGNIREDATKTLDMLHHQGEQIERTHRMAADMHKDLSKGEKLLNNLGGMFSKPWKPKKTREISGPVITAGEAEVGCSSTTQGRKIVFRSTSVESIAERRLVYAPCAVIQTLTTTDCNSLGMYPMSVTKKLISCKISGTLLQTSVEKEKQDDALSDLSNILGDLKNMAVDMGSEIDRQNKALDHLSDEVDELNSRVQGANQLTRRLGREVIAHKFCLFFFPMIE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14664655 14668739 - Bpe003201.1 Bpe10g00897 110019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00897 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 255 317 IPR000727 -
Bpe10g00897 335 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 17 317 - -
Bpe10g00897 335 SMART tSNARE_6 89 158 IPR000727 -
Bpe10g00897 335 SMART tSNARE_6 250 317 IPR000727 -
Bpe10g00897 335 Coils Coil 286 313 - -
Bpe10g00897 335 CDD SNARE_SNAP25N_23N_29N_SEC9N 93 157 IPR044766 GO:0005484|GO:0031201
Bpe10g00897 335 SUPERFAMILY SNARE fusion complex 86 157 - -
Bpe10g00897 335 Gene3D - 83 160 - -
Bpe10g00897 335 MobiDBLite consensus disorder prediction 12 49 - -
Bpe10g00897 335 Gene3D - 254 318 - -
Bpe10g00897 335 SUPERFAMILY SNARE fusion complex 256 313 - -
Bpe10g00897 335 CDD SNARE_Qc 258 319 - -
Bpe10g00897 335 MobiDBLite consensus disorder prediction 1 64 - -
Bpe10g00897 335 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 17 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00897 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101213250 317.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00897 Bpe-Chr10:14664655 Bpe11g01655 Bpe-Chr11:12710260 1.84E-129 wgd
Bpe10g00897 Bpe-Chr10:14664655 Bpe15g00588 Bpe-Chr15:16828474 8.74E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g56 . . . . . Bpe10g00897 Bma14g01662 . Cmo04g01776 . . . . . . Cpe09g00936 Cpe01g01498 . . . . . . . . . . . . . . . . . . . . Chy10g01049 . . Blo11g00791 . . . . . . . . . Cma04g01693 . Car04g01730 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005869 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00897 Bpe_Chr10 FPKM 2.777266 3.294358 0.722941 0.264903 1.012967 1.382109 0.980337 0.0 0.0 0.19588