Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00899 ATGCGAAAACATGTAGCTTTTGTTAATTGTACCGGTAAAGATTCAAGCGGCGTGCATTCTACATTATCAAGGGAGAATAAGAACGCGAGGATACAAATTGGAGGTAATGGTCTGGAATGCTATCCTCTTATCTCAACCAAGGAATTAGAGGCTTCTTCATCCTCATCTTCATCAGACTCGGATTTGTTGCAAGTGGATGCAAACAAAGGTGTGAAATTAAAAGCCTGTACAAATCCCTCAACTGAATCTCGTGAGAATATTCAATTGGAAATAAATGCTGATGAGAGTGATGTTTCTATTAGTAGCTCTATCGAATCAGGAAATATTGATGATGTCTCTCCCGGCACCACTTCCATATCCCTAATTTCTGATGGGGCCCATGAGTGTATATTGCCGGCCATGTCCCCAATTCAATCACCTGAGACTCAAAGAATGGATCGCTCCGAAGGATATGATCCATTTAGAATTCCATCTTCTGTTTTTGATAGAAGCAAATCTACTACACCAGTAGATTGGAGTGTTGCTTCCAATGAGTCATTGTTTAGCATTCACGTTGGAAATTGTAGTTTTTCTAGAGATCATGTTTTAATGTTGGGTGATCTAGGAAAGTCTGGGGAATTAACAAAATCGGGTGAACTATTTGTGCTTAACCCATTGCCTCAAGTCCCAAGGGTGGAAAGTCGTGAACAGAGAGTTGAGACAATAAATGAATCTGTAGTTGGCGAAGCAACGGCCGACATTATCCAGGATGAGAAGACAAGTGCAGAATATCAAAAGGAGAGAAAGTTAGCACCTCCCGACGTCTCATGGAATTTATCCAATGCCTCTCAACAATCAGATGGGAGTGGAACCAGTGCACATTCTTTTGCTTTCCCAATGTAA 882 41.04 MRKHVAFVNCTGKDSSGVHSTLSRENKNARIQIGGNGLECYPLISTKELEASSSSSSSDSDLLQVDANKGVKLKACTNPSTESRENIQLEINADESDVSISSSIESGNIDDVSPGTTSISLISDGAHECILPAMSPIQSPETQRMDRSEGYDPFRIPSSVFDRSKSTTPVDWSVASNESLFSIHVGNCSFSRDHVLMLGDLGKSGELTKSGELFVLNPLPQVPRVESREQRVETINESVVGEATADIIQDEKTSAEYQKERKLAPPDVSWNLSNASQQSDGSGTSAHSFAFPM 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14675395 14676276 + Bpe003203.1 Bpe10g00899 110021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00899 293 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 51 293 - -
Bpe10g00899 293 PANTHER - 51 293 - -
Bpe10g00899 293 MobiDBLite consensus disorder prediction 257 293 - -
Bpe10g00899 293 MobiDBLite consensus disorder prediction 269 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00899 - - - pxb:108867235 181.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00899 Bpe-Chr10:14675395 Bpe11g00053 Bpe-Chr11:398191 4.52E-22 wgd
Bpe10g00899 Bpe-Chr10:14675395 Bpe13g00315 Bpe-Chr13:11017692 4.39E-27 wgd
Bpe10g00899 Bpe-Chr10:14675395 Bpe15g00579 Bpe-Chr15:16759547 3.35E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g35 . . . . . Bpe10g00899 . Bma15g00132 Cmo04g01788 Cmo18g01125 . Cma18g01104 . Car18g01018 . Cpe09g00222 Cpe01g01506 Bhi07g01487 . . . . . . Cla05g02391 Cam05g2568 Cec05g2601 . . . Cre05g2539 . . . . . Csa05g02515 Chy10g01059 Cme10g00356 Blo06g00927 . . . . . . . . . . Cma04g01703 . Car04g01738 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009041 1 3 1 1 1 1 2 0 1 1 1 0 2 1 1 2 0 0 2 1 1 1 1 1 1 0 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00899 Bpe_Chr10 FPKM 11.533804 13.239951 18.82435 15.696404 16.687944 17.534622 12.476517 31.565874 32.280994 34.271954