Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00904 TTCCTTCATTCTTCATTTATTCACACTTCCATAGAGGTTCATTCTCCAGAAGAGGAAGTAGTGATTGCATTGGGAAGCAATGTAGGCGACAGATTGAAGAATTTCAATGAAGCCTTGCACTTAATGAAGAAATCTGGCATACAAATTACAAGACATGGTTGTTTATACGAGACTGCACCAGCTTATGTGACCGATCAGCCTCAGTTTCTCAATTCTGCAGTTAGAGCTTTTACTCGACTTGGTCCACATGAATTAATTGGAGCACTCAAGAAAATAGAGCAAGGCTTGGGTCGCACTGAGGGGATAAGGTATGGTCCGAGACCAATTGACTTGGATATACTGTTTTATGGAAAATTTAAGATACATTCCGATATTCTTACTGTCCCGCATGAAAGAATTTGGGAAAGGCCATTTGTGATGGCTCCTATGGTTGATTTGCTCGGTTTAGCTTCAGATAGTGATGCAGCTGCTTGCTGGCATTCTCTAGCTCCTGATGTTGGTGGACTTTTTGAATCATGGGAAAAACTAGGTGGTGAATCCTTAATTGGAAAAGAAGGTCTCAAAAGAGTTTTGCCTATAGGAAACGATTTATGGGATTGGTCCAGGAAAACGTCTGTGATGGGTATCCTTAATGTAACCCCGGATAGTTTCTGTGATGGTGGCAAGTTTCAGTCTGTTGAGGTTGCAATTTCTCAGGTTCGCTTAATGATTTCTGAAGGGGCAGATATGATCGATATTGGAGCACAATCTACGCGGCCTATGGCCCCTAGAATTTCTGCCGAAGAAGAACTAGATAGATTAATGCCTATCTTAGAAGCTGTCTTAGGAATCCCCGAAATGGAAGGGAAGCTCTTATCTGTAGATACTTTTCATTCACAAGTTGCTTTAGAAGCCGTAAAAAAAGGCGTGCATATCATAAATGATGTATCTGCCGGGCAGTTAGATCCGAATATGCACAAGGTTGTTGCAGCCCTCAACGTTCCTTACATTGCAATGCACATGAGAGGAGATCCATGGACAATGCAAAACGATGAAAATTTGATGTACACTGATGTTTGTAATCAAATTGGCTCTGAATTATATTTACGGGTTAGAGATGCTGAATTATCAGGCATTCCGGCTTGGAGAGTAATTGTCGACCCGGGAATTGGGTTCTCGAAGAACACAGAGCAAAATTTGGAAATCCTCGTGAATTTAGCCAAAATTCGAGGTGCAATGGCCACAAAAAGTTTGGGTTTGTCTCGTGTTCCATTGTTGATTGGACCTTCGAGAAAGCGATTTCTTGGCGAAGTCTGCTCGATTTCAACTGCAACCGAGAGAGATTATGCTACAGTTGCTTCGACTTCGGTTGGAGTATTAGGCGGCGCAAATATTGTAAGAGTTCATAATGTAAGAGCAAATGCAGATGCTGTTAAACTGTGTGACGCAATGATGAAGCTGCAAAAGAGG 1449 41.89 FLHSSFIHTSIEVHSPEEEVVIALGSNVGDRLKNFNEALHLMKKSGIQITRHGCLYETAPAYVTDQPQFLNSAVRAFTRLGPHELIGALKKIEQGLGRTEGIRYGPRPIDLDILFYGKFKIHSDILTVPHERIWERPFVMAPMVDLLGLASDSDAAACWHSLAPDVGGLFESWEKLGGESLIGKEGLKRVLPIGNDLWDWSRKTSVMGILNVTPDSFCDGGKFQSVEVAISQVRLMISEGADMIDIGAQSTRPMAPRISAEEELDRLMPILEAVLGIPEMEGKLLSVDTFHSQVALEAVKKGVHIINDVSAGQLDPNMHKVVAALNVPYIAMHMRGDPWTMQNDENLMYTDVCNQIGSELYLRVRDAELSGIPAWRVIVDPGIGFSKNTEQNLEILVNLAKIRGAMATKSLGLSRVPLLIGPSRKRFLGEVCSISTATERDYATVASTSVGVLGGANIVRVHNVRANADAVKLCDAMMKLQKR 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14702301 14703749 + Bpe024722 Bpe10g00904 110026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00904 483 Pfam 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 21 146 IPR000550 GO:0003848|GO:0009396
Bpe10g00904 483 Pfam Pterin binding enzyme 207 462 IPR000489 GO:0042558
Bpe10g00904 483 Gene3D - 17 162 IPR035907 -
Bpe10g00904 483 ProSitePatterns 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 103 114 IPR000550 GO:0003848|GO:0009396
Bpe10g00904 483 TIGRFAM DHPS: dihydropteroate synthase 206 477 IPR006390 GO:0004156|GO:0009396
Bpe10g00904 483 Gene3D - 185 482 IPR011005 GO:0044237
Bpe10g00904 483 ProSiteProfiles Pterin-binding domain profile. 204 472 IPR000489 GO:0042558
Bpe10g00904 483 CDD DHPS 204 475 IPR006390 GO:0004156|GO:0009396
Bpe10g00904 483 SUPERFAMILY 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 20 147 IPR035907 -
Bpe10g00904 483 PANTHER FOLATE SYNTHESIS PROTEINS 13 478 IPR045031 GO:0004156|GO:0009396
Bpe10g00904 483 CDD HPPK 20 146 IPR000550 GO:0003848|GO:0009396
Bpe10g00904 483 TIGRFAM folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 20 146 IPR000550 GO:0003848|GO:0009396
Bpe10g00904 483 PANTHER FOLIC ACID SYNTHESIS PROTEIN FOL1 13 478 - -
Bpe10g00904 483 ProSitePatterns Dihydropteroate synthase signature 1. 206 221 IPR000489 GO:0042558
Bpe10g00904 483 ProSitePatterns Dihydropteroate synthase signature 2. 240 253 IPR000489 GO:0042558
Bpe10g00904 483 SUPERFAMILY Dihydropteroate synthetase-like 193 479 IPR011005 GO:0044237
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00904 K13941 folKP; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15] - csv:101213228 748.043
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g20 . . . . . Bpe10g00904 . Bma15g00128 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0898 Cone19ag0895 . . . . . . Blo06g00930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007691 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00904 Bpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0