Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00909 ATGAAGCTTGAAAATGAGTCTATATTCTTGAAGTCAACTCTTTGCGACAAGCCGTCATCTAAAGTCTCAGAACTCAACAACGATGCTTTGTACTCGGAGAGATCGAAGATAGCAAACGAGGAAAGTCATGACCAGATTTCGTGCGATCTAAATGGCGATATAAATCTTGACAATCACTTGCAGTGCACGACTAGAGACGAAAATGGTTGGAACCCGTTTAAGGAGGATTCCTCGAGCATTGATAGTTGTGACAATGACGATGTTAAAGCAATAAATGTTGAATCATTTGAGAAAGATTCAGAACTTCACACAGAAAAAAGTGTACCCGAATGTGATCTGCCTAAACTGATCGTTTGTTTCGAAGAAAGTTCTTGCAATATCGTCAAAGACATTTGCATCGATGAGAGAATAAATCCCTGTTCTTCGCCAGTTAAAGTTGTGTTTGAAAGTGATGAGAATGAGGATAATCAAAATGAGGTTATGGTGAAGGAGCTGGTGTTGACTGATGTAACCATGGCTGATGAGCTCAAGATTTCAGAAGACAGTTTGTCGGAGAAGGATTCAATCGATCAAACGGACTGCAATGAGTTGATTCCGGTGATGCTGGTAGAGTGTGACAAAAACGATTCAAATACGAAAGCAAACTCAGAACCTGAACCATGCAACGGCAGTGACAACGATGCCGTCGAAGAACATTCTGTTGAGATGTCTTCTGAGATCGAAAACCGTTCAACTCCTTCCTCAACTTTGGCTCTTGAAGAATTGAAAAACGTCTCCAAGAAATCAACTTCGCCGGATCCAGGTCCAGAATATGATAATCTTACGAATGATTTATCATCTGATGCCAAAACGGAGAAAGAATCCCTCACTTTCAACGAGATAATCATATCAGAATCTGGCAAGTTGTCCGTGGTTGAATATGGTCCGTCGGGCCAAATTCAACACGGGATCGGAGAATCGAGTTTCTCCTCTTCAGCGCCTTTAGCCAGTCTCATAAATTACTCCGGTCCAGTAGCTTATTCCGGAAACCTCTCTATTCGTTCTGACAGCAGCACAACGAGCACTCGATCCTTCGCCTTCCCTATATTGCAGCCGGAATGGCATCATAACAGTCCTGTTCGGATGGCGGAGGCGGATCGAAGATTCTTCCGGAAACACAAGGGGTGGAGGCAGGGCCTTTTTTGCTGTAGATTCTGA 1197 43.19 MKLENESIFLKSTLCDKPSSKVSELNNDALYSERSKIANEESHDQISCDLNGDINLDNHLQCTTRDENGWNPFKEDSSSIDSCDNDDVKAINVESFEKDSELHTEKSVPECDLPKLIVCFEESSCNIVKDICIDERINPCSSPVKVVFESDENEDNQNEVMVKELVLTDVTMADELKISEDSLSEKDSIDQTDCNELIPVMLVECDKNDSNTKANSEPEPCNGSDNDAVEEHSVEMSSEIENRSTPSSTLALEELKNVSKKSTSPDPGPEYDNLTNDLSSDAKTEKESLTFNEIIISESGKLSVVEYGPSGQIQHGIGESSFSSSAPLASLINYSGPVAYSGNLSIRSDSSTTSTRSFAFPILQPEWHHNSPVRMAEADRRFFRKHKGWRQGLFCCRF 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14733706 14735408 - Bpe003212.1 Bpe10g00909 110031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00909 398 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 23 398 IPR040378 GO:0009786
Bpe10g00909 398 MobiDBLite consensus disorder prediction 208 280 - -
Bpe10g00909 398 MobiDBLite consensus disorder prediction 239 278 - -
Bpe10g00909 398 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 23 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00909 - - - jre:109022047 207.608
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00909 Bpe11g01661 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00749 Bpe-Chr7:14042386 Bpe10g00909 Bpe-Chr10:14733706 1.41E-08 transposed
Bpe10g00909 Bpe-Chr10:14733706 Bpe11g01661 Bpe-Chr11:12782792 5.12E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g993 . . . . . Bpe10g00909 . . . Cmo18g01111 . Cma18g01086 . Car18g01007 . Cpe09g00236 . . . . . . . . Cla05g02379 Cam05g2550 Cec05g2582 Cco05g2622 Clacu05g2550 Cmu05g2409 Cre05g2526 . . . . Lsi04g00348 . . . . Blo11g00799 Bda07g01494 . Bpe11g01661 . . . . . . . . . . . Cpe07g00098 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000606 4 19 2 1 2 2 5 2 2 2 2 2 4 2 2 4 2 2 5 2 2 2 2 2 2 2 2 16 5 1 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00909 Bpe_Chr10 FPKM 8.177383 9.885855 9.520582 9.31798 14.082915 13.527136 15.354743 15.307373 14.262131 14.659442