Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00911 TTAATGTTGTTTTTCTTTGTTACAGAGATGAACATGAGTTTCACGCAAGATATGGAATGCGAATATGAAAAACTAATTCGAAGAATGAATCCACCCAGGGTTGTGATTGACAATGAAGCCTGCAAAAATGCGACAGTGATAAGGGTCGATAGCGCGAATAAATACGGGATTCTTCTTGAAGTTGTCCAAGTTCTTACTGATCTCAACCTCATCATAACCAAAGCTTATATATCATCTGATGGCTGTTGGTTCATGGATGTTTTTAATGTCACTGACCCGGACGGAAACAAGATTACAGATGAAAAAACTTTGGATTACATACGAAATTCTCTTGGGTCGGAATCTTGTGTTGCATCTTCGATCAGATCGGTTGGTGTGAAAGCATCGGTGGATCATACGTCGATAGAACTAATTGGAAGTGATAGGCCTGGACTCCTCTCCGAAATGAGTGCAGTTCTTACTCATCTTAAATGCAATGTAGTCAGTGCAGAAGTTTGGACGTATAATACACGGGCTGCAGCCGTAATGCAAGTGACGGACGAGGGAACGGGATCTGCCATTAACGATCCGGAGAGACTATTGAGAATTAAAAAATTACTTTCCAATGTAATCAAAGGAAGCAACAAATCGGGTGGATCCAAGACTGTAATCTCCCATGGGGTTACCCACACCGATCGGAGGCTTCATCAAATGATGTTTGCCGATCGAGACTATGAACGAATGGGCGATGATAATTTGGATGATAAGCAAAGACCACATGTGAATGTTGTTAACATCTGTGATAAAGACTACTCTGTGGTGACGATCGAGAGCAAGGATAGGCCGAAGCTTCTTTTTGACACAGTATGCACTTTGACAGACATGCAATATGTCGTTTTTCATGCGAAAATTGATGCAGAAGGTCCTGAAGCTTATCAGGAATATTATATAAGACACGTAGATGGATCTCCTGTGAAATCGGATGCAGAACGACAAAGGGTGATCCAATGTCTCCAGGCAGCTATCGAAAGAAGAGCTTCAGAGGGGTTGAAGCTCGAACTTTGCATGGCAGATCGAGTCGGACTGTTATCTGATGTAACTCGGATCTTTAGAGAAAACAGCCTCAACGTGACAAGAGCAGAAGTGAGCACAAAATCAGGCAAGGCAATAAACACTTTTTACGTTCGAGATGCTTGGGGATATTCAGTCGATTCTAAGACCATAGAAACCATCAGACAAGCAATTGGACAAACTTTACTTAAAGTAAAAGGTAGTTCCGAAGAGCCGAAAACGCTGATCCAAGAGTCTTCCACCAGCTTCCTATTTGGCGGCCTCTTCAAGTCTCGATCTTTCGCAAACTTTGGGTTGGTTCGATCCTACTCTTGA 1365 42.42 LMLFFFVTEMNMSFTQDMECEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKYGILLEVVQVLTDLNLIITKAYISSDGCWFMDVFNVTDPDGNKITDEKTLDYIRNSLGSESCVASSIRSVGVKASVDHTSIELIGSDRPGLLSEMSAVLTHLKCNVVSAEVWTYNTRAAAVMQVTDEGTGSAINDPERLLRIKKLLSNVIKGSNKSGGSKTVISHGVTHTDRRLHQMMFADRDYERMGDDNLDDKQRPHVNVVNICDKDYSVVTIESKDRPKLLFDTVCTLTDMQYVVFHAKIDAEGPEAYQEYYIRHVDGSPVKSDAERQRVIQCLQAAIERRASEGLKLELCMADRVGLLSDVTRIFRENSLNVTRAEVSTKSGKAINTFYVRDAWGYSVDSKTIETIRQAIGQTLLKVKGSSEEPKTLIQESSTSFLFGGLFKSRSFANFGLVRSYS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14766742 14768857 + Bpe003214.1 Bpe10g00911 110033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00911 454 Pfam ACT domain 45 97 IPR002912 -
Bpe10g00911 454 Pfam ACT domain 345 391 IPR002912 -
Bpe10g00911 454 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 12 452 - -
Bpe10g00911 454 ProSiteProfiles ACT domain profile. 344 420 IPR002912 -
Bpe10g00911 454 CDD ACT_ACR_3 264 338 - -
Bpe10g00911 454 SUPERFAMILY ACT-like 131 196 IPR045865 -
Bpe10g00911 454 ProSiteProfiles ACT domain profile. 134 218 IPR002912 -
Bpe10g00911 454 ProSiteProfiles ACT domain profile. 46 126 IPR002912 -
Bpe10g00911 454 SUPERFAMILY ACT-like 340 409 IPR045865 -
Bpe10g00911 454 Gene3D - 132 206 - -
Bpe10g00911 454 Gene3D - 343 416 - -
Bpe10g00911 454 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 12 452 IPR040217 -
Bpe10g00911 454 SUPERFAMILY ACT-like 41 112 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00911 - - - pop:7489403 735.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00876 Bpe-Chr4:5828627 Bpe10g00911 Bpe-Chr10:14766742 7.23E-07 dispersed
Bpe05g00955 Bpe-Chr5:22462467 Bpe10g00911 Bpe-Chr10:14766742 3.64E-07 dispersed
Bpe07g00144 Bpe-Chr7:1016792 Bpe10g00911 Bpe-Chr10:14766742 4.27E-151 dispersed
Bpe08g01451 Bpe-Chr8:15255690 Bpe10g00911 Bpe-Chr10:14766742 3.75E-06 dispersed
Bpe10g00911 Bpe-Chr10:14766742 Bpe11g00701 Bpe-Chr11:5403131 4.15E-138 dispersed
Bpe04g00062 Bpe-Chr4:510435 Bpe10g00911 Bpe-Chr10:14766742 9.17E-125 transposed
Bpe09g00551 Bpe-Chr9:14295422 Bpe10g00911 Bpe-Chr10:14766742 0 transposed
Bpe10g00011 Bpe-Chr10:224402 Bpe10g00911 Bpe-Chr10:14766742 1.28E-118 transposed
Bpe14g00321 Bpe-Chr14:3146113 Bpe10g00911 Bpe-Chr10:14766742 4.96E-154 transposed
Bpe15g01364 Bpe-Chr15:21644612 Bpe10g00911 Bpe-Chr10:14766742 6.10E-08 transposed
Bpe10g00911 Bpe-Chr10:14766742 Bpe11g01666 Bpe-Chr11:12840163 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002935 2 4 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 1 1 2 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00911 Bpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0