Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00914 ATGGGAAGAGGTAGGGTTCAGTTGAAGAGGATAGAGAACAAGATCAATCGACAGGTTACGTTTTCCAAAAGGAGAAGTGGGTTGCTTAAAAAAGCTCATGAGATCTCTGTTTTATGCGACGCTGATGTTGCTCTGATTGTTTTCTCCCACAAAGGGAAGCTTTTTGAATACGCTACTGATTCTTGCATGGAGAAAATACTTGAGCGATACGAGAGATACTCCTATGCTGAAAGACAGCTACTCTCATCAGAAGCTGAGTTGCAGGTCAACTGGACTTTTGAGTATTCCAGACTCAAAGCGAAGATTGAGCTTCTACAAAAAAACCACAGGCACTATCTTGGAGAAGATTTGGAGTCTTTGAGTCTGAAAGGCCTTCAAACATTAGAGCAGGAGCTTGATACTGCTCTCAAACAAATTCGAACCAGAAAAGTAAGAAATATTTATCAATTTATATGA 456 40.13 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSHKGKLFEYATDSCMEKILERYERYSYAERQLLSSEAELQVNWTFEYSRLKAKIELLQKNHRHYLGEDLESLSLKGLQTLEQELDTALKQIRTRKVRNIYQFI 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14781063 14783270 - Bpe003217.1 Bpe10g00914 110036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00914 151 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe10g00914 151 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe10g00914 151 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe10g00914 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe10g00914 151 ProSiteProfiles K-box domain profile. 88 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe10g00914 151 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bpe10g00914 151 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bpe10g00914 151 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe10g00914 151 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bpe10g00914 151 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 148 - -
Bpe10g00914 151 Pfam K-box region 86 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe10g00914 151 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 148 - -
Bpe10g00914 151 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe10g00914 151 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe10g00914 151 Coils Coil 125 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00914 Bpe-Chr10:14781063 Bpe13g01368 Bpe-Chr13:18936151 2.95E-80 dispersed
Bpe15g00568 Bpe-Chr15:16692832 Bpe10g00914 Bpe-Chr10:14781063 7.52E-47 dispersed
Bpe10g00914 Bpe-Chr10:14781063 Bpe11g01669 Bpe-Chr11:12879739 7.85E-88 wgd
Bpe10g00914 Bpe-Chr10:14781063 Bpe15g00567 Bpe-Chr15:16678416 1.11E-58 wgd
Bpe10g00914 Bpe-Chr10:14781063 Bpe02g02307 Bpe-Chr2:23754926 2.14E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21982 PF01486 K-box 2.70E-19 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00914 K09264 - qsu:112022353 257.299