Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00920 ATGGGTTTCGTCGATTTGGAGCTTGAATCATACCCAGCATACCAAGATTTCTCAGCTCTTCCTGCATTTGCTCTCTTCTTCTTCTCTATTCGCTGCCTCCTCGATAGATTTGTTTTTGAGAAAATTGGAAGACGACTCATTTTTGGAAGTGATGACAAGATGCTTGATGTTCAAATGAGTGAAAAGAGGAAGAAGAAGAAGATAAGGAAGTTTAAGGAGTCGGCATGGAAATGCGTTTATTTTTCTTCGGCAGAGCTCTTGGCTCTGTTTGTAACTTATAATGAACCATGGTTTGCTAGCACTAAGAACTTTTGGGTAGGGCCAGGAGACCAGATTTGGCCTGACCAAAAAACAAAGTTGAAGTTGAAAGGATTATACATGTATGGTGGTGGGTTTTACTTGTATTCGATATTTGCTTTGATTTTCTGGGAAACAAGACGCTCTGATTTTGGAGTGTCAATGGGCCATCATGTTGCATCGTTGATTCTGATCGTGCTATCGTACATTTTCAGATTTGCGAGAGTTGGCTCCGTGGTTCTGGCTCTTCATGATGCCAGTGATGTTTTTTTAGAGATCGGAAAGATGTCCAAATACGGTGGCTACGAGACGATTGCTAGTTGTTCGTTTGTTCTATTCATTTTGTCGTGGACCCTTTTCCGGCTCATTTTCTACCCTTTTTGGGTCCTTTGGAGCACAAGAACACTAGGGGTTCCAAGCTCTCGTATTGTGATTATTGAGGGCATTTATGCTTTGAGTGAAAGATTGCGACCTCTCTTGGACCTTCGAATATCTGTTACTGGTGGAGTTCACTTTGATCTTGTAAAAAGAGTTTTGCGTGATATACAACGTGCAGGCCAGGAACCAGAAGAAATAATTCATCAAATATCTGAAACAAAATGTTTTTATAAACAGGTTTATCCAATGTACAAAGCTTTTATAGAACCAGATCTTCAAGCTGCACAAATAAAAATTATGAACAAATTCAATCCATTTACAGGATTTCAAAGTCCCACTTACATTCTAAAGTCATCGAAGAATGTAATAGGAGATCAAATTAAGGTTGTTCTTTCTGAAGACCACACAGAAAGCAAGGAGCAGACATATGACATCTATCTGTTACCACCAGGTGAAGATCCAGAGTCTTGTCAATCATATCTACGGATGAGGAATAAAGACGGAAAGTACAGTCTTATGTTTGAGGAATGGGTGACCGATAATCCATTTGTCATATCACCAAGAATAACTTTCGAAGTCAGCGTGCGCCTTCTTGGTGGGCTAATGGCCTTGGGTTACACAATAGCGACAATCCTTAAAAGGAGCAGTCATGTATTCTCTGATGATAGAGTGCAAGGAAAAGATCGTACAGTTGTAAAATTTGTGGCAGAGCAGCTGGGATTGGATGGCTCATATACCTCCCGTACCTATATTGAACAAATTCAACTAGAAAAGCTTATAAAAGAAGTCATGGCTTTGCCAGACGATTTAAGAACGAAGCTCAGCCTGGATGAAGATCTTGTTTTAAGCCCCAGAGAGGTACTCTATAAAGCATCAGCTGATAAGGTTGCCCCGAGGAATAAGCATTACAAGAGTGGCATGTCTCAGTCGTATACAACGGAAAGGGATAACACTCTCTTGAAGTTTACTGCTGCCAACTGTGACAGATTTGATGAGGGAAATAATGAGTCTTTGAGGATGGTTGTAAATCAGGAAATCATCACTCAGCTTTCTGAGCAGATTTCGTCATTAAATGATAGAATGGACGAGTTTACTACTTGTATCGAAGGGCTAAATTCCAAGTTAAACATCAAGAAATCTTCCCCCAGCCAACCAAACATGATGCTTCGAGCAGAGCCATGCAATGGCTCTGCTCCAAACTCTTACTTATTGTCTGGTTTATGTAATGGTTCGTTTACTGGATCTGCCTTGCCAAACTCTTCATCTTCTTCCAATTTAGCAAAGGAGTCTCCATTAAGGGAAGAGATTTCAATTATAGCGCGAGGACAACGACAACTTATGCATCAATTAGATTGCCTGGGCAAGCTTATGCGAGAGGATTTGGGAGATAGGCATCAAGTAAGACCAAAAAGGAAAAACATAATGGCTGATTCTGAGCCTTTCACCATTCCGCTTGTTTTGACAACAGTAGCCGCGGGCGGCATTGGAGTGTTCTTGGTCTACAGGTCTCAAGTCTGGAATTAA 2199 40.88 MGFVDLELESYPAYQDFSALPAFALFFFSIRCLLDRFVFEKIGRRLIFGSDDKMLDVQMSEKRKKKKIRKFKESAWKCVYFSSAELLALFVTYNEPWFASTKNFWVGPGDQIWPDQKTKLKLKGLYMYGGGFYLYSIFALIFWETRRSDFGVSMGHHVASLILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYGGYETIASCSFVLFILSWTLFRLIFYPFWVLWSTRTLGVPSSRIVIIEGIYALSERLRPLLDLRISVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETKCFYKQVYPMYKAFIEPDLQAAQIKIMNKFNPFTGFQSPTYILKSSKNVIGDQIKVVLSEDHTESKEQTYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDRVQGKDRTVVKFVAEQLGLDGSYTSRTYIEQIQLEKLIKEVMALPDDLRTKLSLDEDLVLSPREVLYKASADKVAPRNKHYKSGMSQSYTTERDNTLLKFTAANCDRFDEGNNESLRMVVNQEIITQLSEQISSLNDRMDEFTTCIEGLNSKLNIKKSSPSQPNMMLRAEPCNGSAPNSYLLSGLCNGSFTGSALPNSSSSSNLAKESPLREEISIIARGQRQLMHQLDCLGKLMREDLGDRHQVRPKRKNIMADSEPFTIPLVLTTVAAGGIGVFLVYRSQVWN 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14812954 14823654 - Bpe003223.3 Bpe10g00920 110042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00920 732 ProSiteProfiles TLC domain profile. 69 260 IPR006634 GO:0016021
Bpe10g00920 732 PANTHER URIDINE KINASE 233 717 - -
Bpe10g00920 732 PANTHER INORGANIC PYROPHOSPHATASE TTM2 233 717 - -
Bpe10g00920 732 Gene3D - 230 332 IPR027417 -
Bpe10g00920 732 SUPERFAMILY CYTH-like phosphatases 364 478 IPR033469 -
Bpe10g00920 732 Pfam Phosphoribulokinase / Uridine kinase family 239 324 IPR006083 GO:0005524|GO:0016301
Bpe10g00920 732 SMART lag1_27 69 274 IPR006634 GO:0016021
Bpe10g00920 732 Pfam CYTH domain 357 499 IPR023577 -
Bpe10g00920 732 ProSiteProfiles CYTH domain profile. 336 518 IPR023577 -
Bpe10g00920 732 Pfam TLC domain 70 233 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00920 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - qsu:111985646 706.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00920 Bpe-Chr10:14812954 Bpe11g01674 Bpe-Chr11:12988719 0 dispersed
Bpe10g00920 Bpe-Chr10:14812954 Bpe11g01673 Bpe-Chr11:12982219 3.78E-133 wgd
Bpe10g00920 Bpe-Chr10:14812954 Bpe15g00559 Bpe-Chr15:16617569 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g429 . . . . . Bpe10g00920 . . . . . Cma04g00029 . . . . . . . . . . . . . . . . . . . Cone13ag0762 Cone19ag0766 . . . . . Cme10g01474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024552 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00920 Bpe_Chr10 FPKM 11.213603 14.10308 4.297087 3.661019 2.514546 2.987222 2.732882 20.513672 19.837664 19.316734