Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00922 ATGGCGTGTTCTCCAATTCCAATCTCGGTTCTTCATTATTCGAACTCAAGAGCCACCAAAATGCCGTCTTTATCGTCTATATTGAACCCGATAGCCATGGCTAAAGAGCTTCACTTCAATCACGACGGTTCCTCCATTAAAAAGCTACAGGCAGGGGCTGACTTGGTTGCCGAGTTGTTGGGGGTTACTTTGGGTCCGAAGGGAAGGAATGTAGTTTTACAGAACAAGTACGGTCCACCGAAGATTGTCAACGATGGGGAAACTGTCCTAAAGGAGATCGAGTTAGAGGACCCTCTCGAGAATATTGGAGTTAAGTTGATCAGACAAGCCGGTGCAAAAACAAATGATCTTGCTGGCGATGGCTCTACTACATCTGTAATTCTAGCTCATGGACTTGTTACTGAGGGTTTGAAGGTCGTTTCTGTTGGCGTTAATCCTGTTCAAGTTTCACGTGGGATTGACAAAACTGCGAAAGCCCTTGTTACTGAACTCAAATCTATGTCCAAAGAGATTGAGGACAACAAGATAGTAGATGTTGCAGCGGCAAGTGCAGGAAATGATTTTGTGATTGGAAATATGATATCAAATGCTCTTTGCCAAGTTGGAAGGGGAGGTGTTGTCAGGATCGAAAAAGGGAAATGCACGGAAACCAGTTTGCAAATCGTAGAAGGAATGCAGTTTGATCGCGGGTATTTGTCTCCATACTTTGTCACCGATCGTCAGAGAAAGATCATAGAATTCCATGATTGCAAGTTGCTTTTGGTTGACAAAAAAATATCGAACCCGAAAGAGATGTTTAAAATATTGGATAGTGCAGTTAAAGAGAAGTTTCCTATTGTGATAGTAGCAGAAGGCATTGAACAGGAAGCTCTTGCTCCAATAATTAGAAACAAACTCAAAGGCATACTTAAGGCGGCAGCTATTAAGGCTCCGTCGTTTGGAGAGGTCAAGAGCCATTATTTAGACGATATTGCCATTTTGACTGGAGGGACTGTAATCAGAGATGAATCTGGGTTGAGTCTAGAAAAGGCTGGCAAGGAAGTACTAGGCACAGCCACTAAGGTTTTGATTACTAAGAATTCTACGCTGATTATTACGGATGAAAGCACTCGAAAAGCAGTTGAAAAGAGAGTCCTTCAAATCCAAAACACAGTTGAGAACACGCAAGAAAAATTTGAAAAGAAGACCCTGGAGGAGCGAATCGCAAGATTATCCAGGGGAATCGCTATTCTTGAGGTAGGAGCACAGACCCAGGTCGAGTTGAAGGATAAACAACTCAGGATTGAAGATGCTTTAAATGCAACCAAGGCAGCAATCGAAGAAGGTGTTGTGGTCGGCGGGGGCTGTACTCTTTTAAGGCTATCTGCAAAGGTTGATGGTATCAAAAAACTCTTGGACAATGAAGAACAAAGGATTGGAGCTGAGATCTTTAGAAGAGCTTTGAGCTACCCAACAAAACTAATAGCCAAAAATGCTGGCGCAAATGGAAATGTTGTTATCGAGAAGATTTTGGAAAACGACGACATAAATTATGGATACAATGCCGAGAGAGACCGATTTGAGGATTTGATGAAAGCTGGAATCATTGACCCGACAAAGGTAGTTCGATGTTGCTTGGAGCATTCGGCATCTGTGGCAAAAACCTTTCTAATGTCAGAAGCTGTTGTGGTTGATTTGCCGGAAATAAAACGCATTCCGAGGCTCATGCCAAGTCCTCCAAAACCCAATCGTTTAGGCGCTCAAGCATTAGACTTTGAACTTGGTCGGCGGAGACGTACAAAGAACGTTATATTAGACGGTCAAATGTAG 1809 42.9 MACSPIPISVLHYSNSRATKMPSLSSILNPIAMAKELHFNHDGSSIKKLQAGADLVAELLGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLIRQAGAKTNDLAGDGSTTSVILAHGLVTEGLKVVSVGVNPVQVSRGIDKTAKALVTELKSMSKEIEDNKIVDVAAASAGNDFVIGNMISNALCQVGRGGVVRIEKGKCTETSLQIVEGMQFDRGYLSPYFVTDRQRKIIEFHDCKLLLVDKKISNPKEMFKILDSAVKEKFPIVIVAEGIEQEALAPIIRNKLKGILKAAAIKAPSFGEVKSHYLDDIAILTGGTVIRDESGLSLEKAGKEVLGTATKVLITKNSTLIITDESTRKAVEKRVLQIQNTVENTQEKFEKKTLEERIARLSRGIAILEVGAQTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCTLLRLSAKVDGIKKLLDNEEQRIGAEIFRRALSYPTKLIAKNAGANGNVVIEKILENDDINYGYNAERDRFEDLMKAGIIDPTKVVRCCLEHSASVAKTFLMSEAVVVDLPEIKRIPRLMPSPPKPNRLGAQALDFELGRRRRTKNVILDGQM 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14826742 14831587 - Bpe003225.1 Bpe10g00922 110044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00922 602 Coils Coil 451 471 - -
Bpe10g00922 602 TIGRFAM GroEL: chaperonin GroL 34 561 IPR001844 GO:0042026|GO:0140662
Bpe10g00922 602 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 9 567 - -
Bpe10g00922 602 Coils Coil 371 391 - -
Bpe10g00922 602 Gene3D - 170 442 IPR027410 -
Bpe10g00922 602 ProSitePatterns Chaperonins cpn60 signature. 437 448 IPR018370 GO:0005524|GO:0006457
Bpe10g00922 602 Gene3D - 45 557 IPR027413 -
Bpe10g00922 602 SUPERFAMILY GroEL equatorial domain-like 44 556 IPR027413 -
Bpe10g00922 602 PRINTS 60kDa chaperonin signature 430 451 IPR001844 GO:0042026|GO:0140662
Bpe10g00922 602 PRINTS 60kDa chaperonin signature 60 86 IPR001844 GO:0042026|GO:0140662
Bpe10g00922 602 PRINTS 60kDa chaperonin signature 382 407 IPR001844 GO:0042026|GO:0140662
Bpe10g00922 602 PRINTS 60kDa chaperonin signature 300 323 IPR001844 GO:0042026|GO:0140662
Bpe10g00922 602 PRINTS 60kDa chaperonin signature 116 143 IPR001844 GO:0042026|GO:0140662
Bpe10g00922 602 CDD GroEL 35 558 IPR001844 GO:0042026|GO:0140662
Bpe10g00922 602 Gene3D GroEL 224 405 IPR027409 -
Bpe10g00922 602 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 9 567 - -
Bpe10g00922 602 SUPERFAMILY GroEL-intermediate domain like 174 236 IPR027410 -
Bpe10g00922 602 Pfam TCP-1/cpn60 chaperonin family 56 558 IPR002423 GO:0005524
Bpe10g00922 602 SUPERFAMILY GroEL apical domain-like 216 408 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00922 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - qsu:112030120 877.856
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01180 Bpe-Chr8:13548822 Bpe10g00922 Bpe-Chr10:14826742 0 dispersed
Bpe10g00922 Bpe-Chr10:14826742 Bpe11g00819 Bpe-Chr11:6105893 8.44E-163 dispersed
Bpe10g00922 Bpe-Chr10:14826742 Bpe11g00952 Bpe-Chr11:7086918 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00922 Bpe_Chr10 FPKM 10.672641 9.30103 10.101324 8.77529 11.209727 11.596046 15.065737 18.08791 15.710264 17.23406