Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00939 ATGAAGATTTTTGTGAAAACTCTCAAAGGAGCGCACTTCGAAATTGAAGTTCAGCCCGAGGATACGGTTTCGGACGTGAAGAAAAACATTGAAGCCGTTCATGGTGCTGATGTTTATCCTGCTGCACAATTGATGCTCATTCATCAAGGGAAGGTCCTTAAAGATGGATCCACTCTATCTGAAAATAAAGTTGCTGAAAATAGTTTTATTGTTGTTATGTTGAGCAAGGTAATATTAAGTCTGAGTTGGACATGTTTCCTTTTATTGTCTTTAACAGGAAGATTTAAAGCTCCAGTGACAAGCGTCCGGCCTCCTGCCCCAACTCCTGTGGTTACGGCACCACCGGCACCTGAAGCAATCTCAGCTCCCAGCTTGGATGCTGATGTATATGGCCAAGCAGCATCTAATCTGGTTGCTGGCACTAACTTGGAGCAGACCATACAACAGATTCTTGACATGGGTGGAGGAACCTGGGATAGGGATACTGTTATTCGAGCTTTGCGTGCTGCATACAACAATCCCGAGAGAGCTGTTGAATATCTATATTCTGGTATACCTGAGCAAGCTGAAGTTCCACCAGTGGCTCGGGTTCCTCCTCCTGGTCCCGCTGCAACTCCTCAAGTGCAGCCTCCACAGCCAATACAGGCGGCAACTGTTCCGTCAAGTGGTCCAAATGCTAATCCTTTAGACCTCTTTCCCCAGGGTCTTCCCAGCGTAGGTGCAGGCGGTACTGGTGCAGGAAATCTTGATTTTTTGCGCAACAGTCAGCAGTTTCAAGCTTTGAGGGCTATGGTGCAAGCTAACCCACAGATTTTACAGCCAATGCTTCAAGAGCTAGGTAAACAGAATCCGTTTCTTATGAGGCTAATTCAAGAGCATCATGCTGACTTCGTCCGGCTTATTAATGAGCCTGTTGAAGGAGGAGAGGGGAATATACTCGGGCAGCTTGCAGCAGCAATGCCACAGTCTGTGACTGTAACACCTGAAGAGCGAGAAGCAATTCAACGGCTTGAAGCGATGGGGTTTGATAGGAATATTGTTTTGGAAGTTTTCTTTGCCTGCAACAAGAACGAGGAGCTGGCTGCGAACTACCTTTTAGATCACGTCCATGAATTTGAGGATTGA 1125 46.58 MKIFVKTLKGAHFEIEVQPEDTVSDVKKNIEAVHGADVYPAAQLMLIHQGKVLKDGSTLSENKVAENSFIVVMLSKVILSLSWTCFLLLSLTGRFKAPVTSVRPPAPTPVVTAPPAPEAISAPSLDADVYGQAASNLVAGTNLEQTIQQILDMGGGTWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEVPPVARVPPPGPAATPQVQPPQPIQAATVPSSGPNANPLDLFPQGLPSVGAGGTGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPFLMRLIQEHHADFVRLINEPVEGGEGNILGQLAAAMPQSVTVTPEEREAIQRLEAMGFDRNIVLEVFFACNKNEELAANYLLDHVHEFED 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14953382 14961288 + Bpe003244.1 Bpe10g00939 110061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00939 374 Gene3D - 240 305 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bpe10g00939 374 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Bpe10g00939 374 PRINTS DNA repair protein Rad23 signature 356 371 IPR004806 GO:0006289
Bpe10g00939 374 PRINTS DNA repair protein Rad23 signature 341 355 IPR004806 GO:0006289
Bpe10g00939 374 PRINTS DNA repair protein Rad23 signature 275 297 IPR004806 GO:0006289
Bpe10g00939 374 PRINTS DNA repair protein Rad23 signature 324 340 IPR004806 GO:0006289
Bpe10g00939 374 SUPERFAMILY XPC-binding domain 245 311 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bpe10g00939 374 Pfam UBA/TS-N domain 143 181 IPR015940 -
Bpe10g00939 374 Pfam UBA/TS-N domain 330 365 IPR015940 -
Bpe10g00939 374 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 327 368 IPR015940 -
Bpe10g00939 374 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 141 184 IPR015940 -
Bpe10g00939 374 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bpe10g00939 374 Gene3D - 136 186 - -
Bpe10g00939 374 Gene3D - 1 77 - -
Bpe10g00939 374 MobiDBLite consensus disorder prediction 201 221 - -
Bpe10g00939 374 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 1 373 - -
Bpe10g00939 374 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Bpe10g00939 374 CDD UBA1_Rad23_plant 137 186 - -
Bpe10g00939 374 Gene3D - 322 369 - -
Bpe10g00939 374 SMART uba_6 330 367 IPR015940 -
Bpe10g00939 374 SMART uba_6 143 183 IPR015940 -
Bpe10g00939 374 SMART CBM 247 290 IPR006636 -
Bpe10g00939 374 TIGRFAM rad23: UV excision repair protein Rad23 1 373 IPR004806 GO:0006289
Bpe10g00939 374 Pfam XPC-binding domain 249 304 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bpe10g00939 374 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 373 - -
Bpe10g00939 374 SMART ubq_7 1 75 IPR000626 GO:0005515
Bpe10g00939 374 CDD Ubl_Rad23 1 74 - -
Bpe10g00939 374 SUPERFAMILY UBA-like 141 193 IPR009060 GO:0005515
Bpe10g00939 374 SUPERFAMILY UBA-like 311 371 IPR009060 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00939 K10839 RAD23, HR23; UV excision repair protein RAD23 - csin:114298454 505.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00939 Bpe11g01698 CCT
Bpe10g00939 Bpe11g01698 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00589 Bpe-Chr10:12830182 Bpe10g00939 Bpe-Chr10:14953382 1.98E-138 dispersed
Bpe10g00939 Bpe-Chr10:14953382 Bpe11g01698 Bpe-Chr11:13252847 6.85E-155 dispersed
Bpe13g01178 Bpe-Chr13:17176114 Bpe10g00939 Bpe-Chr10:14953382 9.01E-06 dispersed
Bpe10g00939 Bpe-Chr10:14953382 Bpe09g00191 Bpe-Chr9:1327392 3.81E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00939 Bpe_Chr10 FPKM 11.973077 14.537343 13.212464 11.422645 11.216602 9.331111 12.053233 15.682557 14.748409 18.665749