Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00947 ATGGACGGAAGTTGCACCGATGAAAGCACGGAGAGTGAATCCACCTCTATCTCTCCGGTGACTCCACTGGCTTTTCCGGTTGCTAAGTGCTCTTCCCCGCCTGAGGGTCGGTACCGTATGGGTGGCGGAACGTGTGTCGTTGTCGACTCCGATCAGTCGTGCGGTGTGGAAGCAGAGTCAAGAAAGCTCCCCTCCTCCAGGTTCAAAGGTGTGGTGCCGCAGCCCAATGGCCGGTGGGGGGCGCAGATTTATGAAAAGCACCAACGGGTCTGGCTCGGCACTTTTAACGAGGAGGACGAGGCAGCCCGAGCGTATGATGTCGCCGCTCAACGATTCCGCGGCCGCGATGCTGTCACCAATTTCAAGCCGCTTGCCGACACTGCCGACGACGACGTCGAGTTGGAGTTTCTCAATTCCCATTCGAAATCCGAGATCGTTGATATGCTACGTAAGCATACCTACAGCGATGAACTGCAGCAGAGCAAACGAAGAAATGGGTTACTAAACGGCCATGGCAATCGAACAAGAGCCGTTGGCCTAACCGGCGCCGGACAGGACAATGATTCCAAGGAACGTGAGCTGCTTTTCGAAAAGGGGGTGACCCCTAGCGACGTCGGAAAATTGAACCGTCTAGTGATCCCCAAGCAATATGCCGAGAAGCACTTCCCGTTGCAGAGCGGCGCCGCCTCATCCAAAGGCATCCTTCTCAACTTCGAGGACGTTGGAGGAAAAGTATGGCGGTTCCGCTACTCGTATTGGAACAGCAGCCAAAGCTACGTTCTAACAAAAGGATGGAGCCGATTCGTAAAGGAGAAGAACCTCCATGCCGGAGACATCGTCAGCTTCCTCCGATCTACCGGACCGGAGAAACAGCTGTACATTGACTTCAAGGATCGGAATGGACGGGCGGTGGCGGCGGGATTTTCGAACCCAAAGCCACCGGTTCAGATAGTGAGACTATTTGGGGTGAATATTTTCAAAGTACCTGGAAATGGTATTGGTAGTGCAGATAGCGCCGCCTCAACGGGTGGCTGCCATGGGAAGAGAATAAGAGATCAAGTAGAGCTTTTAGGTTTAGAGTACAGTAAAAAGCAAAGGGTAATCGGAGCTCTGTAA 1116 53.49 MDGSCTDESTESESTSISPVTPLAFPVAKCSSPPEGRYRMGGGTCVVVDSDQSCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLADTADDDVELEFLNSHSKSEIVDMLRKHTYSDELQQSKRRNGLLNGHGNRTRAVGLTGAGQDNDSKERELLFEKGVTPSDVGKLNRLVIPKQYAEKHFPLQSGAASSKGILLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLHAGDIVSFLRSTGPEKQLYIDFKDRNGRAVAAGFSNPKPPVQIVRLFGVNIFKVPGNGIGSADSAASTGGCHGKRIRDQVELLGLEYSKKQRVIGAL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15006814 15007929 + Bpe003252.1 Bpe10g00947 110069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00947 371 Pfam B3 DNA binding domain 196 298 IPR003340 GO:0003677
Bpe10g00947 371 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 371 IPR044800 GO:0003700
Bpe10g00947 371 Pfam AP2 domain 67 114 IPR001471 GO:0003700|GO:0006355
Bpe10g00947 371 Gene3D - 184 307 IPR015300 -
Bpe10g00947 371 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Bpe10g00947 371 SUPERFAMILY DNA-binding pseudobarrel domain 193 298 IPR015300 -
Bpe10g00947 371 SMART B3_2 196 300 IPR003340 GO:0003677
Bpe10g00947 371 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Bpe10g00947 371 MobiDBLite consensus disorder prediction 1 26 - -
Bpe10g00947 371 MobiDBLite consensus disorder prediction 1 21 - -
Bpe10g00947 371 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
Bpe10g00947 371 ProSiteProfiles B3 DNA-binding domain profile. 196 300 IPR003340 GO:0003677
Bpe10g00947 371 CDD B3_DNA 195 282 IPR003340 GO:0003677
Bpe10g00947 371 MobiDBLite consensus disorder prediction 165 186 - -
Bpe10g00947 371 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Bpe10g00947 371 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Bpe10g00947 371 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 371 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g02282 Bpe10g00947 CCT
Bpe10g00947 Bpe11g01690 CCT
Bpe10g00947 Bpe11g01690 ECH
Bpe02g02282 Bpe10g00947 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02282 Bpe-Chr2:23612580 Bpe10g00947 Bpe-Chr10:15006814 3.73E-146 dispersed
Bpe08g01418 Bpe-Chr8:14981731 Bpe10g00947 Bpe-Chr10:15006814 5.45E-14 dispersed
Bpe10g00947 Bpe-Chr10:15006814 Bpe11g00900 Bpe-Chr11:6679200 8.97E-54 dispersed
Bpe10g00947 Bpe-Chr10:15006814 Bpe11g01690 Bpe-Chr11:13188925 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21989 PF02362 B3 2.30E-27 CL0405 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00947 K09287 - pvy:116107511 478.789