Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00948 ATGTCTAACGCCATTGCCAATGGAGTGGCGGGAGCTGGAGGAGGAATCATTGCTCAAATCATTACTTACCCTCTTCAAACGGTTAATACACGCCAACAAACTGAAAGAGTGGCAAAAAAAGGGTCAGGTAACGCAGTAGGGGATTCTTCTCATTCCAAAGATCGTGGCACATTTTTTCAAATCCTCCAGGTTGTGAGAACAGAAGGTTGGGGAGGACTTTATAGTGGCCTTAAACCTTCTCTTCTAGGGACGGCTGCATCACAGGGCATCTATTACTACTTTTATCAGGTTTTCAAAAACAAGGCTGAGGCTATTGCTGCTTCTCGCAAAGTTAGAGGACGAGGGGATGGAACTGTTGGCGTGCTTGGTTGGCTTATTGTGGCAGCTCTTGCTGGTTCGTTGAACGTCCTGGCAACAAATCCTATATGGGTTCTTGTAACGCGAATGCAGACACAAACGCAATCAGAAAGAAAAATTATGGAGGAGAAAAGGGGAGCTCTGCTGAGGGAAGCTTCTGAAAACAGATTGGAAGATTCGACTTTAAAAGAGAAATTGATGGAACTTGACTCTGTAAAGCCACGTCCGTATGGAGCCCTGCATGCGGCACGAGAAGTATATAACGAAGCTGGCCTGACTGGATTCTGGAAAGGCATTGTTCCAACACTTATTATGGTGTGCAATCCTTCAATTCAGTTTATGATTTATGAGAGCTTGATAAAACATTTAAGGAAAAAACATGCAACTAAGGGGAAGGGATACCATAATTCCTCTGCTTTGGAGGTTTTTCTATCAGGCGCAATCGCCAAACTGGGAGCAACTATTTCAACGTATCCCCTTCTAGTTGTCAAATCTAGGTTGCAAGCAAAGCAGGAAATTGGTGGGAGCAAGTCGTTAAGATACTCAGGGACCCTGGATGCCATCGCGAAAATGGTGCGGCATGAAGGATTGTTCGTATTTTACAGGGGAATGAGTACAAAAATAGTGCAGAGTGTATTTGCAGCTTCTGTCCTCTTCATGGTTAAAGAGGAGTTTATCAAGATTTATATGGCATTGGTAGATAAGCTACCCATTTAA 1074 43.76 MSNAIANGVAGAGGGIIAQIITYPLQTVNTRQQTERVAKKGSGNAVGDSSHSKDRGTFFQILQVVRTEGWGGLYSGLKPSLLGTAASQGIYYYFYQVFKNKAEAIAASRKVRGRGDGTVGVLGWLIVAALAGSLNVLATNPIWVLVTRMQTQTQSERKIMEEKRGALLREASENRLEDSTLKEKLMELDSVKPRPYGALHAAREVYNEAGLTGFWKGIVPTLIMVCNPSIQFMIYESLIKHLRKKHATKGKGYHNSSALEVFLSGAIAKLGATISTYPLLVVKSRLQAKQEIGGSKSLRYSGTLDAIAKMVRHEGLFVFYRGMSTKIVQSVFAASVLFMVKEEFIKIYMALVDKLPI 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15024580 15029446 - Bpe003254.2 Bpe10g00948 110070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00948 357 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 1 352 - -
Bpe10g00948 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 256 347 IPR018108 -
Bpe10g00948 357 SUPERFAMILY Mitochondrial carrier 4 343 IPR023395 -
Bpe10g00948 357 Pfam Mitochondrial carrier protein 257 349 IPR018108 -
Bpe10g00948 357 Pfam Mitochondrial carrier protein 119 245 IPR018108 -
Bpe10g00948 357 Pfam Mitochondrial carrier protein 4 100 IPR018108 -
Bpe10g00948 357 Gene3D Mitochondrial carrier domain 9 353 IPR023395 -
Bpe10g00948 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 101 IPR018108 -
Bpe10g00948 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 119 241 IPR018108 -
Bpe10g00948 357 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 352 IPR044712 GO:0006862|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00948 K13354 SLC25A17, PMP34; solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17 - jre:109007752 531.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00948 Bpe13g01312 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00948 Bpe-Chr10:15024580 Bpe15g01143 Bpe-Chr15:20411951 7.38E-121 dispersed
Bpe10g00948 Bpe-Chr10:15024580 Bpe11g01370 Bpe-Chr11:10250428 4.29E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g217 . Blo16g01036 . Bda11g01113 Bpe13g01312 Bpe10g00948 . . Cmo04g01626 Cmo18g01082 . Cma18g01062 Car04g01604 Car18g00985 . Cpe09g00257 . Bhi07g01396 . . . . . . . . . . . . . Cone13ag0873 . Cone6ag0487 Cone9ag0499 . Csa05g02558 Chy10g01098 Cme10g00313 Blo06g00980 . . Bda11g01113 . . . Bma06g00792 . . Cmo15g01052 . Cma15g00997 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005361 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00948 Bpe_Chr10 FPKM 0.0 0.0 4.815649 3.45253 15.10259 14.356316 15.056112 0.0 0.0 0.0