Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00969 ATGTTGAATTTGGGCGGGTCCGGGAGCAAGAAGAGGCGTAGCGAGAGGGTTTATAAGTTTAGGAGGTTCGGCGAGAACGGGTATCCGGCTGAGTTAGTGGGCGGATCGTTTAGAGAGAATGTGAAAGCTCTGGTTGAATATGGACATTTGGAGAGTAAATTATGGAGGGGATTGAGAAGTTGGTCTTTTCAGCTGGAAGTGAATAGACATCCTTCATTTCATGTTCTTCTCTTTGTTGTCGAGGAACCCATTGAAGCTTCCCCCTATCTCCATTGTAAGCCATGTCAATTTGTAGGGTGGGGGCATCATATGATCTGCAACAAGAAGTACCATTTTCTGTTGCCGTCCAAAGACACCTTATTGGCTGCATGCTTTGACAACAATGAAGGAGATAATTGGTGGGGAAAGGTTGCAGATTTAGGCGGCCACATCTTGCATGGCGTCTTCCACTCCAATGGCTTCGGCCATTTGCTCTCCCTCAATGGTCTCGAAGCCGGCTCTGACCTCCCCGGCCATTCTGTAATGGACTTGTGGGATCGTCTCTGTACTGGACTCCGAGCAAGGAAAGTGAGTCTGAAAGACGTTTCGGAGAAGAAAGGGATGGAACTGAGGCTTGTTTATGGAGTTGCAGAGGGGCAGCCATGGTTTCACCGATGGGGCTATTCGTTTAGCAGAGGGACCTTCTGCGTCACGCCTGAAATGTACGAAAAAGCCATTGAAGCCATTAGAACCATCCCACTAACCTTCCTTCTTCCTCATCTCCACTTCGTCTTCTCCAAATACCTAGCACTTTCAGAAAACTCCATAGCCAACCTCGGTGATCTCTTCCACTTCCTCCTCGAACTCAAATCGAGGATTCCATCCCAAAATTCTGCCGATTCTTTTTCAAATCAGATTGGGATTTTGACCGAGAATTCCTGCCGGTGGTCCCCCAAGAGAGTGGAAATGGCAGTCAGAGTGATCGTGGAATCGTTGAAACAAGCCGAATTCCGGTGGGTTTCCAGGCAAGAAGTTAGAGATTCTGCCCGTGTTTACATCGGCGATACTGGTCTGCTTGATTTCGTTTTGAAATCGTTAGGAAATCACGTGGTCGGAAAATATCTTGTTCGCCGGAGCTTAAATCCGGTCACAAAAGTTCTTGAATATTGCTTGCAAGATATTGCGAATCTGTTTCCCAATCAAGAATCTGGATTAATTCTTCAAAATTCAAAAGTAAAAACGCGAACGGAGATGATAAATCGAGCTCAGATAACCAAAGACATGGTTTGTCTCTACAAAGCCATCTTCTCCGACCAGACAAACACTCCTATGTCTTCAGCTATATCAATGGCCGCCAGAATTATCCTCGATTCAAAATACCTTACAAAGGATTACGAACACGGGTTCGATGCCGGAAAACGGCATCTCTTCTGCACCGTGAAGCTCAAGGAATCCATCACGCCGCCTCCATACGAGAGTTTCCCGCTGAAAACAAGTTCCACCATTGACGAGCTTAAGCGAGAAGTGGAAAAAACTTTCAGCGAAATATACTACGGACTGAGGACCTTCCAAGCGGAATCAATCGTTAATTTGAACGCAAATGGATCAGACGTAGTATTGAATATGGTGGAATATGGACGAAAACTGGTTTTAGAGGGAAGCGATAGAGAGAGAAAGAGAATGGAGGAAATGTATGAAAATGGCGACATTCAGACGAAGGTGGTGGATTGCAGGTGTGGAGCTGAGGAAGACGATGGAGAGCGAATGATTTGCTGTGATATTTGCGAAGCGTGGCAGCACAGTCGATGCGTTCATATTCCAGACGATGAAGAAATTCCCACCATTTTTCTCTGCAATCGATGCGAGAGAGAAATCCTGCTCTTGTCTTCTCTCCCATGA 1878 46.17 MLNLGGSGSKKRRSERVYKFRRFGENGYPAELVGGSFRENVKALVEYGHLESKLWRGLRSWSFQLEVNRHPSFHVLLFVVEEPIEASPYLHCKPCQFVGWGHHMICNKKYHFLLPSKDTLLAACFDNNEGDNWWGKVADLGGHILHGVFHSNGFGHLLSLNGLEAGSDLPGHSVMDLWDRLCTGLRARKVSLKDVSEKKGMELRLVYGVAEGQPWFHRWGYSFSRGTFCVTPEMYEKAIEAIRTIPLTFLLPHLHFVFSKYLALSENSIANLGDLFHFLLELKSRIPSQNSADSFSNQIGILTENSCRWSPKRVEMAVRVIVESLKQAEFRWVSRQEVRDSARVYIGDTGLLDFVLKSLGNHVVGKYLVRRSLNPVTKVLEYCLQDIANLFPNQESGLILQNSKVKTRTEMINRAQITKDMVCLYKAIFSDQTNTPMSSAISMAARIILDSKYLTKDYEHGFDAGKRHLFCTVKLKESITPPPYESFPLKTSSTIDELKREVEKTFSEIYYGLRTFQAESIVNLNANGSDVVLNMVEYGRKLVLEGSDRERKRMEEMYENGDIQTKVVDCRCGAEEDDGERMICCDICEAWQHSRCVHIPDDEEIPTIFLCNRCEREILLLSSLP 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15179182 15181406 - Bpe003273.2 Bpe10g00969 110091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00969 625 CDD PHD_MMD1_like 569 614 - -
Bpe10g00969 625 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 625 - -
Bpe10g00969 625 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 9 625 - -
Bpe10g00969 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 622 IPR013083 -
Bpe10g00969 625 Pfam PHD-finger 570 616 IPR019787 -
Bpe10g00969 625 ProSitePatterns Zinc finger PHD-type signature. 570 614 IPR019786 -
Bpe10g00969 625 SUPERFAMILY FYVE/PHD zinc finger 560 618 IPR011011 -
Bpe10g00969 625 SMART PHD_3 569 615 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01362 Bpe-Chr2:17225091 Bpe10g00969 Bpe-Chr10:15179182 7.87E-126 dispersed
Bpe04g00328 Bpe-Chr4:2086171 Bpe10g00969 Bpe-Chr10:15179182 3.22E-79 dispersed
Bpe05g00387 Bpe-Chr5:18169758 Bpe10g00969 Bpe-Chr10:15179182 3.83E-07 dispersed
Bpe10g00969 Bpe-Chr10:15179182 Bpe15g00376 Bpe-Chr15:15312422 3.25E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21990 PF00628 PHD 2.00E-08 CL0390 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00969 - - qsu:112023686 767.303