Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00969 ATGTTGAATTTGGGCGGGTCCGGGAGCAAGAAGAGGCGTAGCGAGAGGGTTTATAAGTTTAGGAGGTTCGGCGAGAACGGGTATCCGGCTGAGTTAGTGGGCGGATCGTTTAGAGAGAATGTGAAAGCTCTGGTTGAATATGGACATTTGGAGAGTAAATTATGGAGGGGATTGAGAAGTTGGTCTTTTCAGCTGGAAGTGAATAGACATCCTTCATTTCATGTTCTTCTCTTTGTTGTCGAGGAACCCATTGAAGCTTCCCCCTATCTCCATTGTAAGCCATGTCAATTTGTAGGGTGGGGGCATCATATGATCTGCAACAAGAAGTACCATTTTCTGTTGCCGTCCAAAGACACCTTATTGGCTGCATGCTTTGACAACAATGAAGGAGATAATTGGTGGGGAAAGGTTGCAGATTTAGGCGGCCACATCTTGCATGGCGTCTTCCACTCCAATGGCTTCGGCCATTTGCTCTCCCTCAATGGTCTCGAAGCCGGCTCTGACCTCCCCGGCCATTCTGTAATGGACTTGTGGGATCGTCTCTGTACTGGACTCCGAGCAAGGAAAGTGAGTCTGAAAGACGTTTCGGAGAAGAAAGGGATGGAACTGAGGCTTGTTTATGGAGTTGCAGAGGGGCAGCCATGGTTTCACCGATGGGGCTATTCGTTTAGCAGAGGGACCTTCTGCGTCACGCCTGAAATGTACGAAAAAGCCATTGAAGCCATTAGAACCATCCCACTAACCTTCCTTCTTCCTCATCTCCACTTCGTCTTCTCCAAATACCTAGCACTTTCAGAAAACTCCATAGCCAACCTCGGTGATCTCTTCCACTTCCTCCTCGAACTCAAATCGAGGATTCCATCCCAAAATTCTGCCGATTCTTTTTCAAATCAGATTGGGATTTTGACCGAGAATTCCTGCCGGTGGTCCCCCAAGAGAGTGGAAATGGCAGTCAGAGTGATCGTGGAATCGTTGAAACAAGCCGAATTCCGGTGGGTTTCCAGGCAAGAAGTTAGAGATTCTGCCCGTGTTTACATCGGCGATACTGGTCTGCTTGATTTCGTTTTGAAATCGTTAGGAAATCACGTGGTCGGAAAATATCTTGTTCGCCGGAGCTTAAATCCGGTCACAAAAGTTCTTGAATATTGCTTGCAAGATATTGCGAATCTGTTTCCCAATCAAGAATCTGGATTAATTCTTCAAAATTCAAAAGTAAAAACGCGAACGGAGATGATAAATCGAGCTCAGATAACCAAAGACATGGTTTGTCTCTACAAAGCCATCTTCTCCGACCAGACAAACACTCCTATGTCTTCAGCTATATCAATGGCCGCCAGAATTATCCTCGATTCAAAATACCTTACAAAGGATTACGAACACGGGTTCGATGCCGGAAAACGGCATCTCTTCTGCACCGTGAAGCTCAAGGAATCCATCACGCCGCCTCCATACGAGAGTTTCCCGCTGAAAACAAGTTCCACCATTGACGAGCTTAAGCGAGAAGTGGAAAAAACTTTCAGCGAAATATACTACGGACTGAGGACCTTCCAAGCGGAATCAATCGTTAATTTGAACGCAAATGGATCAGACGTAGTATTGAATATGGTGGAATATGGACGAAAACTGGTTTTAGAGGGAAGCGATAGAGAGAGAAAGAGAATGGAGGAAATGTATGAAAATGGCGACATTCAGACGAAGGTGGTGGATTGCAGGTGTGGAGCTGAGGAAGACGATGGAGAGCGAATGATTTGCTGTGATATTTGCGAAGCGTGGCAGCACAGTCGATGCGTTCATATTCCAGACGATGAAGAAATTCCCACCATTTTTCTCTGCAATCGATGCGAGAGAGAAATCCTGCTCTTGTCTTCTCTCCCATGA 1878 46.17 MLNLGGSGSKKRRSERVYKFRRFGENGYPAELVGGSFRENVKALVEYGHLESKLWRGLRSWSFQLEVNRHPSFHVLLFVVEEPIEASPYLHCKPCQFVGWGHHMICNKKYHFLLPSKDTLLAACFDNNEGDNWWGKVADLGGHILHGVFHSNGFGHLLSLNGLEAGSDLPGHSVMDLWDRLCTGLRARKVSLKDVSEKKGMELRLVYGVAEGQPWFHRWGYSFSRGTFCVTPEMYEKAIEAIRTIPLTFLLPHLHFVFSKYLALSENSIANLGDLFHFLLELKSRIPSQNSADSFSNQIGILTENSCRWSPKRVEMAVRVIVESLKQAEFRWVSRQEVRDSARVYIGDTGLLDFVLKSLGNHVVGKYLVRRSLNPVTKVLEYCLQDIANLFPNQESGLILQNSKVKTRTEMINRAQITKDMVCLYKAIFSDQTNTPMSSAISMAARIILDSKYLTKDYEHGFDAGKRHLFCTVKLKESITPPPYESFPLKTSSTIDELKREVEKTFSEIYYGLRTFQAESIVNLNANGSDVVLNMVEYGRKLVLEGSDRERKRMEEMYENGDIQTKVVDCRCGAEEDDGERMICCDICEAWQHSRCVHIPDDEEIPTIFLCNRCEREILLLSSLP 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15179182 15181406 - Bpe003273.2 Bpe10g00969 110091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00969 625 CDD PHD_MMD1_like 569 614 - -
Bpe10g00969 625 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 625 - -
Bpe10g00969 625 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 9 625 - -
Bpe10g00969 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 622 IPR013083 -
Bpe10g00969 625 Pfam PHD-finger 570 616 IPR019787 -
Bpe10g00969 625 ProSitePatterns Zinc finger PHD-type signature. 570 614 IPR019786 -
Bpe10g00969 625 SUPERFAMILY FYVE/PHD zinc finger 560 618 IPR011011 -
Bpe10g00969 625 SMART PHD_3 569 615 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00969 - - - qsu:112023686 767.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01362 Bpe-Chr2:17225091 Bpe10g00969 Bpe-Chr10:15179182 7.87E-126 dispersed
Bpe04g00328 Bpe-Chr4:2086171 Bpe10g00969 Bpe-Chr10:15179182 3.22E-79 dispersed
Bpe05g00387 Bpe-Chr5:18169758 Bpe10g00969 Bpe-Chr10:15179182 3.83E-07 dispersed
Bpe10g00969 Bpe-Chr10:15179182 Bpe15g00376 Bpe-Chr15:15312422 3.25E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01608 . 45 849 PHD Transcription Factor Family AT3G53680 54.4 2.0e-248 855.5
Bpe15g01101 . 437 566 PHD Transcription Factor Family AT3G53680 54.6 2.6e-38 157.5
Bpe11g00777 . 306 445 PHD Transcription Factor Family AT3G53680 51.8 7.7e-38 156.0
Bpe04g01846 . 425 554 PHD Transcription Factor Family AT3G53680 53.1 3.2e-36 150.6
Bpe10g00969 . 10 625 PHD Transcription Factor Family AT5G22260 50.3 4.1e-175 611.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009705 1 1 1 0 1 2 1 2 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21990 PF00628 PHD 2.00E-08 CL0390 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00969 Bpe_Chr10 FPKM 35.5765 40.850002 0.090053 0.0 3.259227 2.644669 3.50959 0.0 0.0 0.127147