Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00993 ATGGCCGGTGGACTCGCCGGCCACGGACTGAGTACTCCCGGAGTTCTCTTGCTTAATCTCGTGCAACACGTTATTTGTACGTCGGCGGGAACTAACCTCGGCGACGTATTCGAGATGGACTTTACCGATCTGGTGCGTCCGATTGCTCTCTTAAGTCACATTTTCGAAGAGATTAGGGATTTGCTGACGCATAATGAATTTGGAGTTTCCGATGCATCGACGTCGGCTCTGAAGGCCGCTAAGCGTCTACTTTTCGTCGCTCCTACTTTCATTTCCGGCAATAGCTGTTCTGATGAAGCTGTCCAGAAAATAGAATTCCAGTTCAAATACGTTACTTGGAAGTTGGAGAAAGCTTTGGGAAATCTACCATTTCCTCGATATGATATCTCAGAGGAAGTTCAAGAACAGGTTGAGCTGGCAAGAGCACAGTTGAGAAGAGCTGCTAAGAAGTATGGATCGCCATGTTCAATTACACCATCAGTTCTCTCTCAGTTGCTGGACCAAGAAATAAGCATTTTATTGGCCGACCAGTGGTTGAATGGTGTTCCTTTCGAGAATTATTGTACTATAGATGATGATGTTACTGTGAAGATGGATACTTTCTCAAGAATTGTGATGCAATTATTGTTCCCCGGACGATTTCTATACCCCATATCTCTGGAATTAATGAGAGAACCCTCGGTTTCATGTTATAATGGAAATGTAATCTTCTCCGCTGAGTTTATACGAATCTGGACTAGTTTATTGTTGAACTTTTATTATAATTGGTTTGCTTTGCCTCAAATCGCTTCATCAACTGGTTTGCTTTTATCGTTTCTTGTTCTACAGACGTATGAAAGATCCTACATTCAAAGATGGATAGATTGCGGCGATATGACATGCCCAAAATTTCAACAGAAGCTTCAAAATTTAACCCTTACACCAAATTACATTCTGAGAAGTCTCATCTCGCAGTGGTGTCTTAAGCACGGCGGAACATGTCGTGATGTCTGCGAAGAAATAGCAGCCATTGAAGCATTGGTTCACAAGCTTTACTGCCATTACATCGAGGAGCAAAGAGCAGCAGTGACTGAACTCCGATCCCTATCCAAAAGAAGTACAGATAACAGAATACTGATAGCAGAGGCAGGAGCCATTTCGGCTTTGGTCCAACTTTTGACGACGGAAGACCTAGAAACACAAGAGAATGCACAAAATGGGAAAAGTAGAGGGAAAAAAGATGCAGCCACTGCACTATTCAATTTATGCATTTATCCTGGAAACAAAGGCCGAGCTGTGAGGACAGGAATCCTCCCGGCTCTACTGAAGATGCTTACGGATCCAAATTCACGCATGGTAGACAATGCCCTCACCATAATGTCGTTACTCGCCAACCATCAAGAGGCGAAAGTTGCTATCCTAAAAGTTAGACCCATGCCAGTTTTGATAGACATTGTGAGAACGAGTTTGCCTCGGAACAGAGAAAACACGGCAGCCATTTTACTTGCATCGTGTAAGAGAGATTCTGAAAATCTCGCCTCTCTCGGAGCTGTTATACCTCTGACTGAGCTTGCAAAGAGTGGCACAGATAGAGCAAAACGGAAAGCTGACTTCATTGCTGGAGCATCTTCAGAAATTGCGGCAGCATTAGAAGGTGGTTAA 1641 43.69 MAGGLAGHGLSTPGVLLLNLVQHVICTSAGTNLGDVFEMDFTDLVRPIALLSHIFEEIRDLLTHNEFGVSDASTSALKAAKRLLFVAPTFISGNSCSDEAVQKIEFQFKYVTWKLEKALGNLPFPRYDISEEVQEQVELARAQLRRAAKKYGSPCSITPSVLSQLLDQEISILLADQWLNGVPFENYCTIDDDVTVKMDTFSRIVMQLLFPGRFLYPISLELMREPSVSCYNGNVIFSAEFIRIWTSLLLNFYYNWFALPQIASSTGLLLSFLVLQTYERSYIQRWIDCGDMTCPKFQQKLQNLTLTPNYILRSLISQWCLKHGGTCRDVCEEIAAIEALVHKLYCHYIEEQRAAVTELRSLSKRSTDNRILIAEAGAISALVQLLTTEDLETQENAQNGKSRGKKDAATALFNLCIYPGNKGRAVRTGILPALLKMLTDPNSRMVDNALTIMSLLANHQEAKVAILKVRPMPVLIDIVRTSLPRNRENTAAILLASCKRDSENLASLGAVIPLTELAKSGTDRAKRKADFIAGASSEIAAALEGG 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15332923 15335417 - Bpe003298.1 Bpe10g00993 110115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00993 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 319 IPR013083 -
Bpe10g00993 546 Coils Coil 130 150 - -
Bpe10g00993 546 PANTHER U BOX DOMAIN-CONTAINING 399 530 - -
Bpe10g00993 546 PANTHER U BOX DOMAIN-CONTAINING 18 200 - -
Bpe10g00993 546 PANTHER U BOX DOMAIN-CONTAINING 276 397 - -
Bpe10g00993 546 SUPERFAMILY ARM repeat 322 529 IPR016024 -
Bpe10g00993 546 ProSiteProfiles U-box domain profile. 276 326 IPR003613 GO:0004842|GO:0016567
Bpe10g00993 546 Gene3D - 320 537 IPR011989 -
Bpe10g00993 546 Pfam U-box domain 276 323 IPR003613 GO:0004842|GO:0016567
Bpe10g00993 546 SMART Ubox_2 276 319 IPR003613 GO:0004842|GO:0016567
Bpe10g00993 546 SUPERFAMILY RING/U-box 276 325 - -
Bpe10g00993 546 SMART arm_5 366 417 IPR000225 GO:0005515
Bpe10g00993 546 SMART arm_5 418 458 IPR000225 GO:0005515
Bpe10g00993 546 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 276 397 - -
Bpe10g00993 546 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 399 530 - -
Bpe10g00993 546 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 200 - -
Bpe10g00993 546 Pfam Armadillo/beta-catenin-like repeat 367 397 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00993 - - - csv:101221534 384.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00993 Bpe11g01609 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00993 Bpe-Chr10:15332923 Bpe11g01609 Bpe-Chr11:12206034 0 dispersed
Bpe10g00993 Bpe-Chr10:15332923 Bpe11g00764 Bpe-Chr11:5755923 2.09E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g412 . . . . . Bpe10g00993 Bma14g01592 . Cmo04g01075 . Cma04g00997 . Car04g00936 Car04g00053 . . . . . . . . . . Cla07g00605 Cam07g0630 Cec07g0695 Cco07g0680 Clacu07g0636 Cmu07g0660 Cre07g1008 Cone13ag0773 Cone19ag0775 . . Lsi04g01143 . . Cme10g01508 Blo06g01023 Blo11g00735 . . Bpe11g01609 . . . . . Cmo15g00984 . Cma15g00946 . . . . . . . . . . . Cla01g00596 Cam01g0624 Cec01g0615 Cco01g0639 Clacu01g0615 Cmu01g0588 Cre09g1916 Lsi09g00646 Csa05g01046 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005370 2 1 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00993 Bpe_Chr10 FPKM 3.563477 3.521684 14.452374 14.862954 34.535137 36.571629 37.448189 10.317827 9.998064 10.647125