Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00997 CCTACTGTTTTCAGAGACAGAATGGAGATTGAGTACGACAGAGCCACCGAGTTGAAGCAGTTCGACGATTCCAAGTCCGGAGTGAAGGGCCTGCTTGACGCCGGAATCACCTCCATTCCCCGCTTCTTCATTCATCCTCCCCAAACCCTACCCCATCTCAACTCAAATCCCTCATCTCAAAACCACGTCCCTGTAATTCCCACTATCGATATCTCCGGCCTCAACGACCCAGATCTCCGGCCGACAATCGTTGATCAAATCCGACGGGCCTCCTCCACTCTCGGATTCTTCCAGGTGACGAATCACGGGGTCCCACTTCGAATCGTTGACCGGATGAAAGATTTCCACGAGCAACCAACGGAGACCAAGGCGAGGGTGTACCGTAGGGAGCTGGTCACTGGCGTATCCTATTTCTCCAACCTTGACTTATTCCACTCAAAAGCTGCCAGCTGGAGGGATACCCTCCAAATTCGACTGGGCCCCATACCCTCGGTGCCCGACGAGATCCCGGAGATTTGCCGAGATGCGATCGGCGACTTTGACCGGGAGATCGTACGGTTGGGAGATATTCTAATGGAAGTATTGTGCGAGGGGCTGGGATTAGGTGCGGGAAGACTTAAACAGTTGACATGTGGAGAAGGGAGGATGATGGTGGGCCACTACTATCCGTACTGCCCTCAGCCGGATCTGACGGTGGGGATTACATCTCACACCGATCCCAGCGTATTAACGATGTTACTGCAGGATGATAAAGGTGGGTTGCAGGTTAAGCACGGTGGAGATTGGGTGGATGTGATTCCTGTCCCTGATGCCATAGTGATTAACATTGGAGACTTGCTTCAGATTATGTCGAACGATGAATATAAAAGCGTGGAGCATAGAGTGTTGGCCAACACTCGCAAAGAAGCGCGGGTGTCAGTTGCAGTTTTCTTCAACCCTAGAATTATGGACTATTTTTACGGACCATTCTCGGAGCTTATATCACTGGAAAAGCCGATTATTTACCATGAATTCACTTATGAAGATTACATTACACGCTTCTTCGGCGAAGCACTGGATGGACTGTCGCTTCGAAATTTCTACAAAGTTTGA 1092 50.37 PTVFRDRMEIEYDRATELKQFDDSKSGVKGLLDAGITSIPRFFIHPPQTLPHLNSNPSSQNHVPVIPTIDISGLNDPDLRPTIVDQIRRASSTLGFFQVTNHGVPLRIVDRMKDFHEQPTETKARVYRRELVTGVSYFSNLDLFHSKAASWRDTLQIRLGPIPSVPDEIPEICRDAIGDFDREIVRLGDILMEVLCEGLGLGAGRLKQLTCGEGRMMVGHYYPYCPQPDLTVGITSHTDPSVLTMLLQDDKGGLQVKHGGDWVDVIPVPDAIVINIGDLLQIMSNDEYKSVEHRVLANTRKEARVSVAVFFNPRIMDYFYGPFSELISLEKPIIYHEFTYEDYITRFFGEALDGLSLRNFYKV 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15383354 15384753 + Bpe003302.1 Bpe10g00997 110119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00997 363 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG 4-LIKE 9 349 - -
Bpe10g00997 363 SUPERFAMILY Clavaminate synthase-like 26 353 - -
Bpe10g00997 363 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 9 349 - -
Bpe10g00997 363 Pfam 2OG-Fe(II) oxygenase superfamily 216 313 IPR044861 -
Bpe10g00997 363 Gene3D - 18 345 IPR027443 -
Bpe10g00997 363 Pfam non-haem dioxygenase in morphine synthesis N-terminal 66 158 IPR026992 -
Bpe10g00997 363 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 212 313 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00997 - - - bhj:120081582 474.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00236 Bpe-Chr8:1357713 Bpe10g00997 Bpe-Chr10:15383354 1.08E-63 dispersed
Bpe10g00997 Bpe-Chr10:15383354 Bpe13g00564 Bpe-Chr13:12827594 1.06E-89 dispersed
Bpe10g00997 Bpe-Chr10:15383354 Bpe05g00863 Bpe-Chr5:21837675 7.37E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g488 . . . . . Bpe10g00997 Bma14g01935 Bma15g00029 . . . Cma04g00074 . Car04g00070 . . . Bhi07g00382 . . Lac13g1352 . . . Cla07g00549 Cam07g0585 Cec07g0648 Cco07g0615 Clacu07g0588 Cmu07g0623 Cre07g0959 . . . . Lsi04g01107 . . Cme10g01612 . Blo11g00968 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009009 2 1 1 2 1 1 1 1 1 0 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00997 Bpe_Chr10 FPKM 7.077101 8.105988 9.785275 10.594089 8.848834 9.683842 8.606967 25.532228 24.209444 24.86363