Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g01000 ATGTTTGATTGCGGCATGCACATGGGCTACCTCGACCACCGTCGATACCCTGATTTTTCTCTCATCTCCGGCCCCGGCGGAAACTTCAACCACTCTCTTTCTTGCGTCATCATCACCCACTTTCATTTGGACCATGTTGGGGCCCTTCCTTACTTCACTGAAGTTTGCGGTTATACCGGACCAATTTACATGACGTATCCAACAAAGGCATTGGCGCCTTTAATGTTAGAAGATTATCGGAAAGTGATGGTTGAGCGAAGAGGTGAAGAGGAGCAATTCACCTCTGATCATATTATGCAATGCATGGGGAAAGTTATACCCGTGGATCTGAAGCAGACTGTGCAGGTTGACAAAGACCTGCAAATTCGTGCATACTATGCTGGACATGTTCTGGGTGCTGCAATGTTTTATGCAAAAGTAGGTGACAGCGCTATGGTGTACACCGGAGATTACAATATGACACCTGATAGGCATCTTGGAGCAGCTCAAATTGATCTATTACAACTGGACCTTCTTATAACAGAGTCCACGTATGCAACGACCATCCGTGATTCAAAATATGCCCGGGAGAGGGAATTTCTTAAAGCTGTTCATAATTGTGTTGCGGGTGGAGGGAAAGTACTAATTCCTACATTTGCTCTTGGACGAGCCCAGCAGGAACTCTGTATCTTGTTGGATGATTATTGGCAGCGCATGAATCTAAACGTTCCTATTTATTTCTCGGCAGGTTTGACTATTCAAGCTAATATGTATTACAAGATGCTCATCAGTTGGACCAGCCAGAGGATCAAAGAGACATACACCACACATAATGCATTTGATTTTAAAAATGTCCGTAATTTCGATCGCTCGATGATGGATGCTCCTGGACCATGTGTTCTTTTTGCTACACCTGGGATGATCAGTGGTGGTTTTTCACTTGAGGCCTTTAAGAAGTGGGCTCCTTCTGAAATGAACCTCATCACATTGCCAGGGTACTGTGTTGCTGGAACCATTGGGCATAAATTGATGTCAGGTAAACCCACCAAAATTGATCTGGATAAGGACTCTCACATCGACATTCATCAATTGTCTTTCAGTCCACATACTGATGCAAAAGGGATCATGGATCTTGTCAAGTTTTTGAGCCCCAAGCATGTGGTTCTAGTACATGGCGAGAAACCGAAGATGGCAACTCTGAAAGGAAAAATCCATTCTGAATTGGGAATCCCATGTTATGACCCTGCAAATAATGAGACAGTCTCCATCCCTTCAACTCATTATATCAAAGCAGACGCATCAAATATTTTTCTGCGCAGTTGCTTGAATCCAAACTTCAAGTTGTCGAATGGTGAGTCGATGAACGAGTCGGATATGATCACAAAAGACAAGAAGTTTCTTCCTAGGCTTGAGTTGAGGGATGAAAGGGTGGGTGAAGGAATCTTGGTGATGGAGCAAAGCAAAGAAATGAAAATATTACACCAAAATGAGCTGCTTCATCTGCTGGGGAAGAAAAGGCATGAGGTTGAGTTTGCTCATTGTTTTCCCGTGGCTTCATGCAATTCAAGGTACAGAGTTGGGTGGATTCGGATTTTATCGGCTAAATTATCGAATAAGCTCAGGGAAGGCAATGTCGAGGAGTATGAAGATGGTCTTCAAGTTGAGTCGTTTCGGTTGTCGATTTGTTGGAAAAAAAAGTGTCTTTACAGGAGGGAGAACAAGAGTGAGGATAAATCAAGGGAAATGTTTTGTTGTTGCAGGTGGACAGCTGGGGACGAGGAGCTTGCTTTGAAAATCATGGGGATAATAGACGAGTTACAATTAGAGAGTCTTGAGCTGCCTACCACCTCCACCTCCACCTCCACAGCCACAGCCACCTCCACCTCCTCCTCCTGCGATGATGATGGCTAA 1890 44.23 MFDCGMHMGYLDHRRYPDFSLISGPGGNFNHSLSCVIITHFHLDHVGALPYFTEVCGYTGPIYMTYPTKALAPLMLEDYRKVMVERRGEEEQFTSDHIMQCMGKVIPVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDLLQLDLLITESTYATTIRDSKYAREREFLKAVHNCVAGGGKVLIPTFALGRAQQELCILLDDYWQRMNLNVPIYFSAGLTIQANMYYKMLISWTSQRIKETYTTHNAFDFKNVRNFDRSMMDAPGPCVLFATPGMISGGFSLEAFKKWAPSEMNLITLPGYCVAGTIGHKLMSGKPTKIDLDKDSHIDIHQLSFSPHTDAKGIMDLVKFLSPKHVVLVHGEKPKMATLKGKIHSELGIPCYDPANNETVSIPSTHYIKADASNIFLRSCLNPNFKLSNGESMNESDMITKDKKFLPRLELRDERVGEGILVMEQSKEMKILHQNELLHLLGKKRHEVEFAHCFPVASCNSRYRVGWIRILSAKLSNKLREGNVEEYEDGLQVESFRLSICWKKKCLYRRENKSEDKSREMFCCCRWTAGDEELALKIMGIIDELQLESLELPTTSTSTSTATATSTSSSCDDDG 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15415289 15423860 - Bpe003306.1 Bpe10g01000 110122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g01000 629 Gene3D - 185 363 - -
Bpe10g01000 629 SUPERFAMILY Metallo-hydrolase/oxidoreductase 1 417 IPR036866 -
Bpe10g01000 629 SMART Beta_Casp_2 218 336 IPR022712 -
Bpe10g01000 629 Pfam Metallo-beta-lactamase superfamily domain 31 164 IPR001279 -
Bpe10g01000 629 PANTHER INTEGRATOR COMPLEX SUBUNIT 11 1 597 - -
Bpe10g01000 629 Pfam Beta-Casp domain 219 336 IPR022712 -
Bpe10g01000 629 SMART Lactamase_B_5a 5 205 IPR001279 -
Bpe10g01000 629 MobiDBLite consensus disorder prediction 610 629 - -
Bpe10g01000 629 CDD INTS11-like_MBL-fold 1 162 IPR041897 -
Bpe10g01000 629 Gene3D - 1 397 IPR036866 -
Bpe10g01000 629 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 353 406 IPR011108 -
Bpe10g01000 629 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 1 597 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g01000 K13148 CPSF3L, INTS11; integrator complex subunit 11 [EC:3.1.27.-] - pvy:116137330 921.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00122 Bpe-Chr3:1749479 Bpe10g01000 Bpe-Chr10:15415289 4.31E-25 dispersed
Bpe10g01000 Bpe-Chr10:15415289 Bpe11g01832 Bpe-Chr11:14720294 4.92E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g499 . . . . . Bpe10g01000 . . . . . . . . . . Cpe01g01664 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01889 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003480 1 12 1 1 1 1 1 1 1 1 3 1 1 0 1 1 1 2 1 1 1 1 1 3 1 2 1 2 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g01000 Bpe_Chr10 FPKM 6.032671 7.816843 3.560181 3.820545 4.687626 3.748614 2.985193 0.570623 0.765611 0.822556