Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g01001 ATGGCGGACATTCCTGGTGACGGAGGAGGGGCGGATGGACTACCGGTGGCGACGCCGAATCCGCCGCCCTTGACCTTGTCAGGATCGTTCAAGGATGGGAGGAGTTCCTCGAGGAGGAGAACTTCCGTGAGACCCAGTTTGGATGCTGACGAGTTCTTGAACTTGTTGCACGGCTCGGATCCGGTCAAGGTCGAGCTCAACAGGCTCGAAAATGAGGTTCGAGATAAGGACCGAGAGTTGGGAGAAGCTCAGGCGGAAATCAAAGCCTTGAGGTTTTCGGAGCGGCTAAGAGAAAAGGCAGTCGAAGAGCTCACAGAAGAGCTATCAAAAGTGGATGAGAAGCTGAAATTAACAGAATCTCTTCTTGAAAGCAAGAATCTTGAAATAAAGAAAATCAATGATGAGAAGAAGGCATCCATGGCAGCTCAATTTGCTGCCGAAGCCACCCTTAGAAGAGTTCATGCTGCCCAGAAAGATGACGATATGCCCCCTATTGAAGCTATTCTTGCACCTTTGGAGGCTGAGCTCAAGCTTGCCCGACAAGAGATTGCTAAGCTTCAAGATGACAATAAAGCATTAGATCGTCTTACAAAATCAAAGGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTCCAGGTTGCTTTAGCTAAAGCCTCGATGGTGGATGACCTTCAGAATAAGAACCAAGAATTAATGAAGCAAATTGAAATCTGCCAGGAGGAAAACAAAATTTTGGACAAGATGCACAGACTAAAAGTCGCTGAGGTTGAAAAGTTAACCCAGACTGTTAGGGAGTTAGAGGAGGCAGTTCTTGCTGGTGGTGCAGCAGCAAATGCAGTGCGAGATTATCAGCGAAAAGTTCAGGAGATGAATGAGGAAAGGAAAACTCTTGACCGGGAGTTGGCCCGTGCAAAAGTAACAGCAAACAGAGTAGCTACGGTAGTAGCAAATGAATGGAAAGATGCCAACGACAAAGTTATGCCAGTAAAACAGTGGCTTGAAGAACGGAGGTTTTTACAGGCATGCTTCAATCTTCCTTTTTCCTTTTGGTTATTGATGCGTTGGAGAAGGCACATCTCTTTCATGAAAGATTTTGGGGAAATGCAGCAGCTTCGTGACAAGCTTGCCATAACTGAGAGAACTGCAAAGTCTGAAGCACAACTGAAAGAAAAATATCAATTGCGGCTTAAAGTATTGGAGGAGAGTTTGAGAGGGTCCTCTAGTAGTAATAATTGCAGTACACCAGAGGGAAGAAGTTTAAGCAATGGTCCTTCTCGTCGCCAATCACTGGGCGGTGCAGATAACATCTCAAAACTAACGTCCAATGGGTTTCTATCCAAGAGAACTCCTACTTCCCAATTGAGATCTTTGTCCTCTAGCATGGTCTTGAAACATGCAAAGGGCACGTCAAAATCATTTGACGGAGGTACAAGATCATTGGACCGTGGAAAAATCCTTTTAAATGGAAACAACCTTACTTACAGTTTCAATCAGCCTGCTGATGGAGCAAAGGAAGGTAATGCACAGAGTGAATGGAAAGGCAATCCTGAAAAGAGAAATGATTTTTCAACTGGTGATTGTGAAGAAAGTGTCCCAGTGGTTTTGTATGATTTTCTGCAAAAAGAGGTTGTATCTTTGAGAAAATCTGGTTATGAGAAAGATCAAAGCTTGAAAGATAAGGACGACGCAATCGAGATGTTGGCAAAAAAGGTAGAGACACTGAGTAAAGCAATGGAGGTTGAAGCAAAGAAGATGAGAAGAGAAGTTGCTGCCATGGAGAAGGAAGTAGCTGCCATGCGAGTGGAGAAAGAACATGAGAATAGGGCCAAGCGATTTGGAAATGTCAAGGGTCCAGTTAATTCAGTTACAGCTCAGCTGCTTTCTGGAAGGTACATA 1896 44.62 MADIPGDGGGADGLPVATPNPPPLTLSGSFKDGRSSSRRRTSVRPSLDADEFLNLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRFSERLREKAVEELTEELSKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRLKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQACFNLPFSFWLLMRWRRHISFMKDFGEMQQLRDKLAITERTAKSEAQLKEKYQLRLKVLEESLRGSSSSNNCSTPEGRSLSNGPSRRQSLGGADNISKLTSNGFLSKRTPTSQLRSLSSSMVLKHAKGTSKSFDGGTRSLDRGKILLNGNNLTYSFNQPADGAKEGNAQSEWKGNPEKRNDFSTGDCEESVPVVLYDFLQKEVVSLRKSGYEKDQSLKDKDDAIEMLAKKVETLSKAMEVEAKKMRREVAAMEKEVAAMRVEKEHENRAKRFGNVKGPVNSVTAQLLSGRYI 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15425605 15429777 - Bpe024726 Bpe10g01001 110123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g01001 632 Coils Coil 169 196 - -
Bpe10g01001 632 MobiDBLite consensus disorder prediction 405 460 - -
Bpe10g01001 632 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 359 630 IPR009768 GO:0007010|GO:0008017
Bpe10g01001 632 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 1 341 IPR009768 GO:0007010|GO:0008017
Bpe10g01001 632 Coils Coil 101 135 - -
Bpe10g01001 632 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-1 359 630 - -
Bpe10g01001 632 MobiDBLite consensus disorder prediction 1 45 - -
Bpe10g01001 632 Pfam Microtubule-associated protein 70 361 622 IPR009768 GO:0007010|GO:0008017
Bpe10g01001 632 Pfam Microtubule-associated protein 70 50 341 IPR009768 GO:0007010|GO:0008017
Bpe10g01001 632 Coils Coil 568 609 - -
Bpe10g01001 632 Coils Coil 221 269 - -
Bpe10g01001 632 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-1 1 341 - -
Bpe10g01001 632 Coils Coil 66 86 - -
Bpe10g01001 632 MobiDBLite consensus disorder prediction 497 524 - -
Bpe10g01001 632 Coils Coil 280 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g01001 - - - zju:107429255 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00039 Bpe-Chr3:665935 Bpe10g01001 Bpe-Chr10:15425605 0 dispersed
Bpe04g00593 Bpe-Chr4:3774720 Bpe10g01001 Bpe-Chr10:15425605 0 dispersed
Bpe08g00033 Bpe-Chr8:189950 Bpe10g01001 Bpe-Chr10:15425605 3.34E-110 dispersed
Bpe10g01001 Bpe-Chr10:15425605 Bpe01g00046 Bpe-Chr1:319099 7.16E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g01001 Bpe_Chr10 FPKM 5.849544 5.08118 26.08894 24.446867 88.87841 87.050423 83.646461 11.014508 10.691811 11.449091